Carubv10010259m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10010259m.g T007850_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF014
M06581_2.00 		Arabidopsis thaliana
YCDYCDCCACCGHCD
HGDCGGTGGHGRHGR		 Dap-seq
OMalley et al.(2016)
AT1G44830_col_a 		0.796 1.000
ERF012
M06570_2.00 		Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC
GDCGGTGGHDDHDDNDNNDN		 Dap-seq
OMalley et al.(2016)
DREB26_col_a 		0.782 0.960
ERF013
M06601_2.00 		Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN
NNNNNNDNHDDTGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g77640_col_a 		0.763 0.960
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10010259m AP2 37 88

Links

Other AP2 family TFs
Other Capsella rubella TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm024743 Prunus mume Pm024743 I
OS06G0162700 Oryza sativa OS06G0162700 I
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I
Sb01g005100 Sorghum bicolor Sb01g005100 I
Si039046m.g Setaria italica Si039046m.g I
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I
TRIUR3_12421 Triticum urartu TRIUR3_12421 I
Ca_17087 Cicer arietinum Ca_17087 I
Ca_17294 Cicer arietinum Ca_17294 I
Ca_19427 Cicer arietinum Ca_19427 I
Bra025299 Brassica rapa Bra025299 I
cassava19706.m1 Manihot esculenta cassava19706.m1 I
cassava33974.m1 Manihot esculenta cassava33974.m1 I
cassava9008.m1 Manihot esculenta cassava9008.m1 I
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I
MDP0000199939 Malus domestica MDP0000199939 I
Pavir.J02497 Panicum virgatum Pavir.J02497 I
Pavir.J02718 Panicum virgatum Pavir.J02718 I
Pavir.J25000 Panicum virgatum Pavir.J25000 I
Pavir.J37434 Panicum virgatum Pavir.J37434 I
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I
BGIOSGA022369 Oryza indica BGIOSGA022369 I
F775_22212 Aegilops tauschii F775_22212 I
GLYMA05G02300 Glycine max GLYMA05G02300 I
GLYMA06G19280 Glycine max GLYMA06G19280 I
GLYMA16G07927 Glycine max GLYMA16G07927 I
GLYMA19G13923 Glycine max GLYMA19G13923 I
GRMZM2G302549 Zea mays GRMZM2G302549 I
GRMZM5G870592 Zea mays GRMZM5G870592 I
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I
GSMUA_Achr6G06490_001 Musa acuminata GSMUA_Achr6G06490_001 I
LPERR06G03780 Leersia perrieri LPERR06G03780 I
LPERR12G04190 Leersia perrieri LPERR12G04190 I
OMERI06G04840 Oryza meridionalis OMERI06G04840 I
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I
OPUNC06G03990 Oryza punctata OPUNC06G03990 I
ONIVA06G05390 Oryza nivara ONIVA06G05390 I
MTR_3g077650 Medicago truncatula MTR_3g077650 I
OLONG_010000 Oryza longistaminata OLONG_010000 I
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I
OBART06G04170 Oryza barthii OBART06G04170 I
OB06G13860 Oryza brachyantha OB06G13860 I
MTR_7g037260 Medicago truncatula MTR_7g037260 I
MTR_5g049190 Medicago truncatula MTR_5g049190 I
cassava26674.m1 Manihot esculenta cassava26674.m1 N
cassava26507.m1 Manihot esculenta cassava26507.m1 N
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N
29681.m001315 Ricinus communis 29681.m001315 N
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N
POPTR_0009s04870 Populus trichocarpa POPTR_0009s04870 N
GLYMA03G15930 Glycine max GLYMA03G15930 N
GLYMA03G15870 Glycine max GLYMA03G15870 N
POPTR_0001s25710 Populus trichocarpa POPTR_0001s25710 N