Pavir.J32835 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J32835 T009635_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF2
M01631_2.00 		Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN		 PBM
Weirauch et al.(2014)
pTH8113 		0.769 0.755
ERF2
M06672_2.00 		Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD		 Dap-seq
OMalley et al.(2016)
ERF2_col_a 		0.769 0.755
ERF2
M06673_2.00 		Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN		 Dap-seq
OMalley et al.(2016)
ERF2_colamp_a 		0.769 0.755
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.756 0.755
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.756 0.755
Q7Y1W2_TOBAC
M09735_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CEF1_01 		0.741 0.816
RAP2-12
M01046_2.00 		Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY		 PBM
Sullivan et al.(2014)
pTH7359 		0.736 0.776
RAP2-12
M06588_2.00 		Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN		 Dap-seq
OMalley et al.(2016)
RAP212_col_a 		0.736 0.776
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.726 0.735
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.723 0.735
RAP2-2
M00719_2.00 		Arabidopsis thaliana
NNRBYGNN
NNCRVYNN		 PBM
Chang et al.(2013)
pTH7227 		0.718 0.735
EREBP1
M09708_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$EREBP1_01 		0.717 0.796
ERF2_TOBAC
M09727_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF2_01 		0.715 0.714
HRE1
M06595_2.00 		Arabidopsis thaliana
NHNBMDCCGCCGCCRYHDHHN
NDDHDRYGGCGGCGGHKVNDN		 Dap-seq
OMalley et al.(2016)
ERF73_col_a 		0.710 0.776
HRE1
M06596_2.00 		Arabidopsis thaliana
HNYHDMHNYCDCCGCCGCCRY
RYGGCGGCGGHGRNDKHDRND		 Dap-seq
OMalley et al.(2016)
ERF73_colamp_a 		0.710 0.776
ERF109
M00849_2.00 		Arabidopsis thaliana
NGCCGNHNN
NNDNCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RRTF1 		0.700 0.714
ERF109
M06653_2.00 		Arabidopsis thaliana
CKSCGCCGYHWHHNN
NNDDWDRCGGCGSMG		 Dap-seq
OMalley et al.(2016)
RRTF1_col_a 		0.700 0.714
ERF109
M06654_2.00 		Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN
NNNDAWDRCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a 		0.700 0.714
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.699 0.735
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.699 0.735
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.699 0.735
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.699 0.735
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.699 0.735
ERF5_TOBAC
M09729_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF4_02 		0.698 0.714
Q2TN80_WHEAT
M09715_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_02 		0.696 0.796
ERF095
M06624_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ESE1_col_a 		0.691 0.694
ERF095
M06625_2.00 		Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR		 Dap-seq
OMalley et al.(2016)
ESE1_colamp_a 		0.691 0.694
ERF7
M01617_2.00 		Arabidopsis thaliana
NGCCGNMNNN
NNNKNCGGCN		 PBM
Weirauch et al.(2014)
pTH7606 		0.689 0.653
ERF7
M06620_2.00 		Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD
HGRCGGCGGHGRHRRNRDNDR		 Dap-seq
OMalley et al.(2016)
ERF7_col_a 		0.689 0.653
ERF7
M06621_2.00 		Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH
DYGGCGGCGSHDDNDNNDNNN		 Dap-seq
OMalley et al.(2016)
ERF7_colamp_a 		0.689 0.653
ERF106
M01628_2.00 		Arabidopsis thaliana
NNNVCRVCN
NGBYGBNNN		 PBM
Weirauch et al.(2014)
pTH7426 		0.687 0.653
ERF6
M01621_2.00 		Arabidopsis thaliana
NNGCCGGCVN
NBGCCGGCNN		 PBM
Weirauch et al.(2014)
pTH7228 		0.687 0.776
ERF6
M06637_2.00 		Arabidopsis thaliana
NHNHHDCCGCCGCCRYHDHHN
NDDHDRYGGCGGCGGHDDNDN		 Dap-seq
OMalley et al.(2016)
ERF6_col 		0.687 0.776
PK02330.1
M01095_2.00 		Cannabis sativa
NNNGCCGBCN
NGVCGGCNNN		 PBM
Lambert et al.(2019)
pTH10093 		0.687 0.694
0100010458
M01644_2.00 		Ostreococcus tauri
MGCCGSCR
YGSCGGCK		 PBM
Weirauch et al.(2014)
pTH9447 		0.683 0.673
A5JTT1_WHEAT
M09700_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_01 		0.682 0.714
O65242_TOBAC
M09730_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TSI1_01 		0.682 0.653
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.682 0.653
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.680 0.694
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.680 0.653
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.680 0.653
ERF14
M01045_2.00 		Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN		 PBM
Sullivan et al.(2014)
pTH9793 		0.679 0.673
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J32835.1.p AP2 87 138

Links

Other AP2 family TFs
Other Panicum virgatum TFs

984 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB124 Arabidopsis thaliana AT1G14350 D
MYB88 Arabidopsis thaliana AT2G02820 D
Carubv10017119m.g Capsella rubella Carubv10017119m.g I
Traes_2BS_F1B450FA4 Triticum aestivum Traes_2BS_F1B450FA4 I
Carubv10011707m.g Capsella rubella Carubv10011707m.g I
Cagra.3501s0066 Capsella grandiflora Cagra.3501s0066 I
Cagra.0534s0022 Capsella grandiflora Cagra.0534s0022 I
Bostr.13671s0016 Boechera stricta Bostr.13671s0016 I
Bostr.0556s0099 Boechera stricta Bostr.0556s0099 I
Aquca_002_00543 Aquilegia coerulea Aquca_002_00543 I
mgf009409m Mimulus guttatus mgf009409m I
Cucsa.285270 Cucumis sativus Cucsa.285270 I
cassava39089.m1 Manihot esculenta cassava39089.m1 I
cassava35260.valid.m1 Manihot esculenta cassava35260.valid.m1 I
29736.m002013 Ricinus communis 29736.m002013 I
Pm006532 Prunus mume Pm006532 I
Cla010333 Citrullus lanatus Cla010333 I
Ca_18779 Cicer arietinum Ca_18779 I
VIT_01s0026g01910 Vitis vinifera VIT_01s0026g01910 I
PDK_20s1473891g001 Phoenix dactylifera PDK_20s1473891g001 I
orange1.1g044977m.g Citrus sinensis orange1.1g044977m.g I
AMTR_s00010p00252990 Amborella trichopoda AMTR_s00010p00252990 I
PK05123.1 Cannabis sativa PK05123.1 I
Thhalv10007659m.g Eutrema salsugineum Thhalv10007659m.g I
Thhalv10004109m.g Eutrema salsugineum Thhalv10004109m.g I
SapurV1A.0200s0020 Salix purpurea SapurV1A.0200s0020 I
SapurV1A.0062s0030 Salix purpurea SapurV1A.0062s0030 I
Pavir.J36475 Panicum virgatum Pavir.J36475 I
Pavir.Bb03405 Panicum virgatum Pavir.Bb03405 I
Ciclev10031405m.g Citrus clementina Ciclev10031405m.g I
MDP0000210970 Malus domestica MDP0000210970 I
MDP0000165523 Malus domestica MDP0000165523 I
Lus10030494.g Linum usitatissimum Lus10030494.g I
Gorai.013G083300 Gossypium raimondii Gorai.013G083300 I
Gorai.005G139500 Gossypium raimondii Gorai.005G139500 I
evm.TU.supercontig_183.27 Carica papaya evm.TU.supercontig_183.27 I
Eucgr.G02522 Eucalyptus grandis Eucgr.G02522 I
Eucgr.B03417 Eucalyptus grandis Eucgr.B03417 I
GLYMA01G05190 Glycine max GLYMA01G05190 I
MTR_8g468380 Medicago truncatula MTR_8g468380 I
MTR_5g038910 Medicago truncatula MTR_5g038910 I
GSMUA_Achr6G10650_001 Musa acuminata GSMUA_Achr6G10650_001 I
GSMUA_Achr10G18880_001 Musa acuminata GSMUA_Achr10G18880_001 I
GRMZM2G064630 Zea mays GRMZM2G064630 I
GLYMA18G16040 Glycine max GLYMA18G16040 I
GLYMA08G40950 Glycine max GLYMA08G40950 I
GLYMA02G02310 Glycine max GLYMA02G02310 I
OB07G28520 Oryza brachyantha OB07G28520 I
MYB88 Arabidopsis lyrata fgenesh2_kg.5__181__AT2G02820.2 I
FLP Arabidopsis lyrata fgenesh2_kg.1__1561__AT1G14350.1 I
Bra024804 Brassica rapa Bra024804 I
Bra019658 Brassica rapa Bra019658 I
Bo7g080730 Brassica oleracea Bo7g080730 I
Bo5g019500 Brassica oleracea Bo5g019500 I
Bo2g136560 Brassica oleracea Bo2g136560 I
BGIOSGA026188 Oryza indica BGIOSGA026188 I
PGSC0003DMG400025612 Solanum tuberosum PGSC0003DMG400025612 I
Solyc05g007160.2 Solanum lycopersicum Solyc05g007160.2 I
Solyc04g005710.1 Solanum lycopersicum Solyc04g005710.1 I
Si029124m.g Setaria italica Si029124m.g I
Sb02g040050 Sorghum bicolor Sb02g040050 I
PRUPE_ppa017536mg Prunus persica PRUPE_ppa017536mg I
POPTR_0010s10310 Populus trichocarpa POPTR_0010s10310 I
POPTR_0008s14790 Populus trichocarpa POPTR_0008s14790 I
PGSC0003DMG400026758 Solanum tuberosum PGSC0003DMG400026758 I
TCM_011776 Theobroma cacao TCM_011776 I
PGSC0003DMG400002828 Solanum tuberosum PGSC0003DMG400002828 I
OS07G0627300 Oryza sativa OS07G0627300 I
ORUFI07G24080 Oryza rufipogon ORUFI07G24080 I
ORGLA07G0179200 Oryza glaberrima ORGLA07G0179200 I
OPUNC07G21540 Oryza punctata OPUNC07G21540 I
OGLUM07G22980 Oryza glumaepatula OGLUM07G22980 I
OBART07G22930 Oryza barthii OBART07G22930 I