Thhalv10006200m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10006200m.g T009898_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF035
M06631_2.00 		Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR		 Dap-seq
OMalley et al.(2016)
AT3G60490_col_a 		0.759 0.920
ERF035
M06632_2.00 		Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a 		0.759 0.920
ERF034
M06614_2.00 		Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN		 Dap-seq
OMalley et al.(2016)
At2g44940_col_a 		0.750 0.880
ERF034
M06615_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a 		0.750 0.880
ERF043
M01627_2.00 		Arabidopsis thaliana
YRCCGACA
TGTCGGYR		 PBM
Weirauch et al.(2014)
pTH7413 		0.731 0.800
ERF043
M06651_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a 		0.731 0.800
ERF043
M06652_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_col 		0.731 0.800
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.728 0.820
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.728 0.820
Q8LKX0_MAIZE
M09722_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DBF2_01 		0.712 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10006200m AP2 57 108

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

364 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LFY Arabidopsis thaliana AT5G61850 D
Carubv10028602m.g Capsella rubella Carubv10028602m.g I
Traes_2AL_83D0D0C3F Triticum aestivum Traes_2AL_83D0D0C3F I
Traes_2BL_8DEC0EFBF Triticum aestivum Traes_2BL_8DEC0EFBF I
LFY Vitis vinifera VIT_17s0000g00150 I
Ca_01386 Cicer arietinum Ca_01386 I
Cla019619 Citrullus lanatus Cla019619 I
30147.m014401 Ricinus communis 30147.m014401 I
cassava19992.m1 Manihot esculenta cassava19992.m1 I
cassava40548.m1 Manihot esculenta cassava40548.m1 I
Cucsa.156880 Cucumis sativus Cucsa.156880 I
mgf013601m Mimulus guttatus mgf013601m I
mgf020579m Mimulus guttatus mgf020579m I
Aquca_043_00044 Aquilegia coerulea Aquca_043_00044 I
Bostr.26833s0050 Boechera stricta Bostr.26833s0050 I
Cagra.4553s0022 Capsella grandiflora Cagra.4553s0022 I
Solyc03g118160.1 Solanum lycopersicum Solyc03g118160.1 I
Ciclev10033942m.g Citrus clementina Ciclev10033942m.g I
Eucgr.K02192 Eucalyptus grandis Eucgr.K02192 I
gene30683-v1.0-hybrid Fragaria vesca gene30683-v1.0-hybrid I
gene33406-v1.0-hybrid Fragaria vesca gene33406-v1.0-hybrid I
Gorai.001G053900 Gossypium raimondii Gorai.001G053900 I
Lus10016732.g Linum usitatissimum Lus10016732.g I
Lus10022427.g Linum usitatissimum Lus10022427.g I
orange1.1g044766m.g Citrus sinensis orange1.1g044766m.g I
Pavir.Ga00621 Panicum virgatum Pavir.Ga00621 I
Pavir.Gb00795 Panicum virgatum Pavir.Gb00795 I
SapurV1A.2394s0010 Salix purpurea SapurV1A.2394s0010 I
Thhalv10005606m.g Eutrema salsugineum Thhalv10005606m.g I
chr1.CM0094.750.nd Lotus japonicus chr1.CM0094.750.nd I
OB04G30790 Oryza brachyantha OB04G30790 I
AMTR_s00016p00083040 Amborella trichopoda AMTR_s00016p00083040 I
OSL Oryza indica BGIOSGA014428 I
Bo2g161690 Brassica oleracea Bo2g161690 I
Bo3g109270 Brassica oleracea Bo3g109270 I
Bra019619 Brassica rapa Bra019619 I
Bra029305 Brassica rapa Bra029305 I
BRADI5G20340 Brachypodium distachyon BRADI5G20340 I
GLYMA04G37900 Glycine max GLYMA04G37900 I
GLYMA06G17170 Glycine max GLYMA06G17170 I
GRMZM2G098813 Zea mays GRMZM2G098813 I
GRMZM2G180190 Zea mays GRMZM2G180190 I
GSMUA_Achr6G16390_001 Musa acuminata GSMUA_Achr6G16390_001 I
LPERR04G19570 Leersia perrieri LPERR04G19570 I
MTR_3g098560 Medicago truncatula MTR_3g098560 I
TCM_014768 Theobroma cacao TCM_014768 I
OBART04G23870 Oryza barthii OBART04G23870 I
OGLUM04G23830 Oryza glumaepatula OGLUM04G23830 I
OLONG_021167 Oryza longistaminata OLONG_021167 I
OMERI04G19760 Oryza meridionalis OMERI04G19760 I
ONIVA04G23030 Oryza nivara ONIVA04G23030 I
OPUNC04G21410 Oryza punctata OPUNC04G21410 I
ORGLA04G0204600 Oryza glaberrima ORGLA04G0204600 I
FL Oryza sativa OS04G0598300 I
FL Populus trichocarpa POPTR_0015s11820 I
PRUPE_ppa006372mg Prunus persica PRUPE_ppa006372mg I
Sb06g027340 Sorghum bicolor Sb06g027340 I
Si011756m.g Setaria italica Si011756m.g I
LFY Arabidopsis lyrata Al_scaffold_0008_2690 I