LACBIDRAFT_191754 (Laccaria bicolor)
APSES

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04383 (KilA-N) IPR018004 LACBIDRAFT_191754 T012043_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_fgenesh2_pg.C_10694_CONSTRUCT
M01102_2.00 		PBM CONSTRUCTS
NNACGCGW
WCGCGTNN		 PBM
Lambert et al.(2019)
pTH9838 		0.867 0.959
ANIA_03154
M01650_2.00 		Aspergillus nidulans
NNACGCG
CGCGTNN		 PBM
Weirauch et al.(2014)
pTH8232 		0.792 0.562
NCU07246
M01653_2.00 		Neurospora crassa
NDCRCGN
NCGYGHN		 PBM
Weirauch et al.(2014)
pTH8957 		0.772 0.616
MBP1
M00003_2.00 		Saccharomyces cerevisiae
VACGCGWD
HWCGCGTB		 PBM
Badis et al.(2008)
MBP1_4486 		0.730 0.507
MBP1
M01514_2.00 		Saccharomyces cerevisiae
NNNNDCRCGH
DCGYGHNNNN		 PBM
Zhu et al.(2009)
Mbp1 		0.730 0.507
MBP1
M07434_2.00 		Saccharomyces cerevisiae
NDCGCGH
DCGCGHN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0329.1 		0.730 0.507
MBP1
M08472_2.00 		Saccharomyces cerevisiae
NDCGCGH
DCGCGHN		 Misc
DeBoer et al.(2011)
YDL056W_500 		0.730 0.507
NCU07587
M01654_2.00 		Neurospora crassa
NNNDCRCGN
NCGYGHNNN		 PBM
Weirauch et al.(2014)
pTH9687 		0.729 0.630
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EDR02284 APSES 19 94

Links

Other APSES family TFs
Other Laccaria bicolor TFs

438 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GATA15 Arabidopsis thaliana AT3G06740 D
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I
Carubv10027332m.g Capsella rubella Carubv10027332m.g I
Carubv10014841m.g Capsella rubella Carubv10014841m.g I
Carubv10014665m.g Capsella rubella Carubv10014665m.g I
Carubv10005860m.g Capsella rubella Carubv10005860m.g I
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I
Cagra.0133s0025 Capsella grandiflora Cagra.0133s0025 I
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I
Bostr.22252s0362 Boechera stricta Bostr.22252s0362 I
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I
mgf022078m Mimulus guttatus mgf022078m I
mgf003937m Mimulus guttatus mgf003937m I
Cucsa.252730 Cucumis sativus Cucsa.252730 I
Cucsa.069460 Cucumis sativus Cucsa.069460 I
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I
PK18820.1 Cannabis sativa PK18820.1 I
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I
Thhalv10021708m.g Eutrema salsugineum Thhalv10021708m.g I
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I
Lus10037721.g Linum usitatissimum Lus10037721.g I
Lus10016849.g Linum usitatissimum Lus10016849.g I
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I
Bra012742 Brassica rapa Bra012742 I
GRMZM2G325850 Zea mays GRMZM2G325850 I
GLYMA17G03410 Glycine max GLYMA17G03410 I
GLYMA07G37190 Glycine max GLYMA07G37190 I
GATA15 Arabidopsis lyrata fgenesh2_kg.3__690__AT3G06740.1 I
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I
Bra037421 Brassica rapa Bra037421 I
Bra033533 Brassica rapa Bra033533 I
Bra022184 Brassica rapa Bra022184 I
Bra021209 Brassica rapa Bra021209 I
cassava15577.m1 Manihot esculenta cassava15577.m1 I
Bo7g104200 Brassica oleracea Bo7g104200 I
Bo7g092660 Brassica oleracea Bo7g092660 I
Bo5g123610 Brassica oleracea Bo5g123610 I
Bo3g068560 Brassica oleracea Bo3g068560 I
Bo1g122970 Brassica oleracea Bo1g122970 I
Bo1g055120 Brassica oleracea Bo1g055120 I
Bo00847s050 Brassica oleracea Bo00847s050 I
AT4G16141 Arabidopsis thaliana AT4G16141 I
GATA17 Arabidopsis thaliana AT3G16870 I
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I
cassava15588.m1 Manihot esculenta cassava15588.m1 I
29889.m003248 Ricinus communis 29889.m003248 I
Pm008287 Prunus mume Pm008287 I
Cla022104 Citrullus lanatus Cla022104 I
Cla009422 Citrullus lanatus Cla009422 I
Ca_02992 Cicer arietinum Ca_02992 I
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I
TCM_026732 Theobroma cacao TCM_026732 I
TCM_021303 Theobroma cacao TCM_021303 I
TCM_004753 Theobroma cacao TCM_004753 I
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I
GATA16 Arabidopsis lyrata scaffold_801309.1 I
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I
MTR_4g121110 Medicago truncatula MTR_4g121110 I
Solyc01g060490.2 Solanum lycopersicum Solyc01g060490.2 N
AMTR_s00057p00121410 Amborella trichopoda AMTR_s00057p00121410 N