17269_YMR016C (Saccharomyces paradoxus)
APSES

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04383 (KilA-N) IPR018004 17269_YMR016C T013955_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SOK2
M00007_2.00 		Saccharomyces cerevisiae
NCMTGCAKGNN
NNCMTGCAKGN		 PBM
Badis et al.(2008)
SOK2_4560 		0.880 1.000
SOK2
M07438_2.00 		Saccharomyces cerevisiae
NNBMTGCAKNN
NNMTGCAKVNN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0385.1 		0.880 1.000
SOK2
M08477_2.00 		Saccharomyces cerevisiae
HNBCTGCR
YGCAGVND		 Misc
DeBoer et al.(2011)
YMR016C_404 		0.880 1.000
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
17269_YMR016C APSES 434 525

Links

Other APSES family TFs
Other Saccharomyces paradoxus TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.H00795 Eucalyptus grandis Eucgr.H00795 N 0.000
Solyc06g083420.1 Solanum lycopersicum Solyc06g083420.1 N 0.000
TCM_002924 Theobroma cacao TCM_002924 N 0.000
Traes_3AL_06889C77D Triticum aestivum Traes_3AL_06889C77D N 0.000
Traes_3DL_FC1A52B36 Triticum aestivum Traes_3DL_FC1A52B36 N 0.000
TRIUR3_27363 Triticum urartu TRIUR3_27363 N 0.000
VIT_07s0005g06680 Vitis vinifera VIT_07s0005g06680 N 0.000
Cla015187 Citrullus lanatus Cla015187 N 0.000
Pm020347 Prunus mume Pm020347 N 0.000
30204.m001750 Ricinus communis 30204.m001750 N 0.000
cassava349.valid.m1 Manihot esculenta cassava349.valid.m1 N 0.000
Cucsa.078210 Cucumis sativus Cucsa.078210 N 0.000
Bostr.19424s0133 Boechera stricta Bostr.19424s0133 N 0.000
Bostr.2021s0055 Boechera stricta Bostr.2021s0055 N 0.000
Ciclev10018446m.g Citrus clementina Ciclev10018446m.g N 0.000
Si020947m.g Setaria italica Si020947m.g N 0.000
evm.TU.supercontig_8.144 Carica papaya evm.TU.supercontig_8.144 N 0.000
gene17608-v1.0-hybrid Fragaria vesca gene17608-v1.0-hybrid N 0.000
Gorai.004G226000 Gossypium raimondii Gorai.004G226000 N 0.000
Gorai.007G155000 Gossypium raimondii Gorai.007G155000 N 0.000
MDP0000155726 Malus domestica MDP0000155726 N 0.000
MDP0000250529 Malus domestica MDP0000250529 N 0.000
orange1.1g000147m.g Citrus sinensis orange1.1g000147m.g N 0.000
SapurV1A.0135s0340 Salix purpurea SapurV1A.0135s0340 N 0.000
SapurV1A.0342s0100 Salix purpurea SapurV1A.0342s0100 N 0.000
Thhalv10002368m.g Eutrema salsugineum Thhalv10002368m.g N 0.000
PK23540.1 Cannabis sativa PK23540.1 N 0.000
chr1.LjT36F23.70.nd Lotus japonicus chr1.LjT36F23.70.nd N 0.000
PDK_20s1355591g002 Phoenix dactylifera PDK_20s1355591g002 N 0.000
OB01G30180 Oryza brachyantha OB01G30180 N 0.000
EAF1A Arabidopsis thaliana AT3G24880 N 0.000
BGIOSGA027556 Oryza indica BGIOSGA027556 N 0.000
BRADI2G14372 Brachypodium distachyon BRADI2G14372 N 0.000
BRADI2G41720 Brachypodium distachyon BRADI2G41720 N 0.000
F775_03250 Aegilops tauschii F775_03250 N 0.000
fgenesh2_kg.3__2706__AT3G24880.1 Arabidopsis lyrata fgenesh2_kg.3__2706__AT3G24880.1 N 0.000
GLYMA03G18725 Glycine max GLYMA03G18725 N 0.000
GLYMA08G46710 Glycine max GLYMA08G46710 N 0.000
GLYMA16G14060 Glycine max GLYMA16G14060 N 0.000
GLYMA18G36628 Glycine max GLYMA18G36628 N 0.000
GSMUA_Achr1G21080_001 Musa acuminata GSMUA_Achr1G21080_001 N 0.000
LPERR11G18970 Leersia perrieri LPERR11G18970 N 0.000
MTR_7g056603 Medicago truncatula MTR_7g056603 N 0.000
EAF1B Arabidopsis thaliana AT3G24870 N 0.000
OBART08G04660 Oryza barthii OBART08G04660 N 0.000
OGLUM08G04910 Oryza glumaepatula OGLUM08G04910 N 0.000
OLONG_015531 Oryza longistaminata OLONG_015531 N 0.000
OMERI08G04670 Oryza meridionalis OMERI08G04670 N 0.000
ONIVA08G04510 Oryza nivara ONIVA08G04510 N 0.000
OPUNC08G04510 Oryza punctata OPUNC08G04510 N 0.000
ORUFI08G05170 Oryza rufipogon ORUFI08G05170 N 0.000
OS08G0177300 Oryza sativa OS08G0177300 N 0.000
POPTR_0002s24490 Populus trichocarpa POPTR_0002s24490 N 0.000
POPTR_0014s19020 Populus trichocarpa POPTR_0014s19020 N 0.000
PRUPE_ppa000065mg Prunus persica PRUPE_ppa000065mg N 0.000
Sb03g025920 Sorghum bicolor Sb03g025920 N 0.000
Si000015m.g Setaria italica Si000015m.g N 0.000