Arid5a (Mus musculus)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSMUSG00000037447 T014644_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid5a
M00116_2.00		 Mus musculus
NHAATATTDNN
NNHAATATTDN		 PBM
Badis et al.(2009)
Arid5a_3770		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid5a
M01663_2.00 		Rattus norvegicus
NNNRWATHNN
NNDATWYNNN		 PBM
Weirauch et al.(2014)
pTH5121 		0.785 1.000
arid6
M01657_2.00 		Danio rerio
NNRWATYN
NRATWYNN		 PBM
Weirauch et al.(2014)
pTH5120 		0.649 0.647
Arid5b
M01661_2.00 		Mus musculus
NDATWHNN
NNDWATHN		 PBM
Weirauch et al.(2014)
pTH4426 		0.632 0.753
ARID5B
M08707_2.00 		Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C 		0.632 0.753
Arid5b
M08708_2.00 		Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C 		0.632 0.753
ARID5B
M09767_2.00 		Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM		 Transfac
Matys et al.(2006)
V$MRF2_01 		0.632 0.753
e_gw.4.260.1_CONSTRUCT
M01668_2.00 		PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN		 PBM
Weirauch et al.(2014)
pTH5122 		0.493 0.588
For this family, TFs with SR scores > 0.422 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00116_2.00 ARID/BRIGHT 21 106

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000095385 ARID/BRIGHT 81 166
ENSMUSP00000110683 ARID/BRIGHT 51 89
ENSMUSP00000110683 ARID/BRIGHT 164 231
ENSMUSP00000110684 ARID/BRIGHT 52 137
ENSMUSP00000115490 ARID/BRIGHT 51 136

Links

Other ARID/BRIGHT family TFs
Other Mus musculus TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TBX1 Homo sapiens ENSG00000184058 D 0.000
Tbx1 Mus musculus ENSMUSG00000009097 D 0.000
Tbx10 Rattus norvegicus ENSRNOG00000017944 I 0.000
NEMVEDRAFT_v1g214571 Nematostella vectensis NEMVEDRAFT_v1g214571 I 0.000
L798_01101 Zootermopsis nevadensis L798_01101 I 0.000
tbx1 Takifugu rubripes ENSTRUG00000014017 I 0.000
tbx1 Tetraodon nigroviridis ENSTNIG00000016767 I 0.000
ENSTNIG00000014352 Tetraodon nigroviridis ENSTNIG00000014352 I 0.000
TBX1 Taeniopygia guttata ENSTGUG00000008395 I 0.000
ENSTGUG00000007382 Taeniopygia guttata ENSTGUG00000007382 I 0.000
ENSSTOG00000011629 Ictidomys tridecemlineatus ENSSTOG00000011629 I 0.000
ENSSTOG00000004505 Ictidomys tridecemlineatus ENSSTOG00000004505 I 0.000
SMAR009230 Strigamia maritima SMAR009230 I 0.000
Tbx1 Rattus norvegicus ENSRNOG00000001892 I 0.000
TBX10 Pteropus vampyrus ENSPVAG00000008592 I 0.000
TBX10 Pan troglodytes ENSPTRG00000003972 I 0.000
ENSPFOG00000009621 Poecilia formosa ENSPFOG00000009621 I 0.000
ENSPFOG00000009540 Poecilia formosa ENSPFOG00000009540 I 0.000
TBX10 Procavia capensis ENSPCAG00000009585 I 0.000
ENSPANG00000015763 Papio anubis ENSPANG00000015763 I 0.000
ENSPANG00000006501 Papio anubis ENSPANG00000006501 I 0.000
Myotis_brandtii_Tbx10_10030825 Myotis brandtii Myotis_brandtii_Tbx10_10030825 I 0.000
tbx1.S Xenopus laevis XB-GENE-6254396 I 0.000
tbx1.L Xenopus laevis XB-GENE-478088 I 0.000
tbx1 Xenopus tropicalis XB-GENE-478084 I 0.000
LDEC008541 Leptinotarsa decemlineata LDEC008541 I 0.000
Sakowv30001714m.g Saccoglossus kowalevskii Sakowv30001714m.g I 0.000
fgenesh2_kg.scaffold_118000001 Branchiostoma floridae fgenesh2_kg.scaffold_118000001 I 0.000
Pvit_16222 Pogona vitticeps Pvit_16222 I 0.000
Pvit_15846 Pogona vitticeps Pvit_15846 I 0.000
Ogr08509 Ophisaurus gracilis Ogr08509 I 0.000
PHUM607490 Pediculus humanus PHUM607490 I 0.000
ENSP00000335191 Macaca fascicularis ENSP00000335191 I 0.000
ENSP00000331791-D2 Bos grunniens ENSP00000331791-D2 I 0.000
ENSBTAP00000015683-D1 Bos grunniens ENSBTAP00000015683-D1 I 0.000
Alligator_sinensis_CCG022145.1 Alligator sinensis Alligator_sinensis_CCG022145.1 I 0.000
Aan_R010744 Calypte anna Aan_R010744 I 0.000
YQE_10853 Dendroctonus ponderosae YQE_10853 I 0.000
tetur04g00890 Tetranychus urticae tetur04g00890 I 0.000
TC015327 Tribolium castaneum TC015327 I 0.000
CapteG226618 Capitella teleta CapteG226618 I 0.000
ENSCSAG00000008726 Chlorocebus sabaeus ENSCSAG00000008726 I 0.000
tbx1 Gasterosteus aculeatus ENSGACG00000013057 I 0.000
TBX10 Homo sapiens ENSG00000167800 I 0.000
ENSFCAG00000005446 Felis catus ENSFCAG00000005446 I 0.000
TBX10 Felis catus ENSFCAG00000001760 I 0.000
ENSFALG00000008041 Ficedula albicollis ENSFALG00000008041 I 0.000
Tbx10 Dipodomys ordii ENSDORG00000010070 I 0.000
TBX1 Dasypus novemcinctus ENSDNOG00000035422 I 0.000
tbx1 Danio rerio ENSDARG00000031891 I 0.000
ENSCSAG00000011818 Chlorocebus sabaeus ENSCSAG00000011818 I 0.000
ENSONIG00000015827 Oreochromis niloticus ENSONIG00000015827 I 0.000
TBX1 Callithrix jacchus ENSCJAG00000014591 I 0.000
TBX10 Canis familiaris ENSCAFG00000011264 I 0.000
ENSAMXG00000020444 Astyanax mexicanus ENSAMXG00000020444 I 0.000
ENSAMEG00000001098 Ailuropoda melanoleuca ENSAMEG00000001098 I 0.000
ENSACAG00000008549 Anolis carolinensis ENSACAG00000008549 I 0.000
DAPPUDRAFT_3881 Daphnia pulex DAPPUDRAFT_3881 I 0.000
CGI_10008753 Crassostrea gigas CGI_10008753 I 0.000
ACYPI001903 Acyrthosiphon pisum ACYPI001903 I 0.000
ENSGGOG00000009181 Gorilla gorilla ENSGGOG00000009181 I 0.000
tbx1 Oryzias latipes ENSORLG00000015256 I 0.000
TBX1 Otolemur garnettii ENSOGAG00000003596 I 0.000
TBX10 Otolemur garnettii ENSOGAG00000000784 I 0.000
Tbx10 Mus musculus ENSMUSG00000037477 I 0.000
ENSMPUG00000004076 Mustela putorius furo ENSMPUG00000004076 I 0.000
ENSMPUG00000003900 Mustela putorius furo ENSMPUG00000003900 I 0.000
TBX10 Monodelphis domestica ENSMODG00000021334 I 0.000
TBX1 Monodelphis domestica ENSMODG00000021176 I 0.000
ENSMMUG00000018529 Macaca mulatta ENSMMUG00000018529 I 0.000
ENSMGAG00000004357 Meleagris gallopavo ENSMGAG00000004357 I 0.000
ENSMEUG00000011624 Macropus eugenii ENSMEUG00000011624 I 0.000
ENSMEUG00000007568 Macropus eugenii ENSMEUG00000007568 I 0.000
TBX1 Loxodonta africana ENSLAFG00000021555 I 0.000
ENSLACG00000016333 Latimeria chalumnae ENSLACG00000016333 I 0.000
ENSLACG00000004994 Latimeria chalumnae ENSLACG00000004994 I 0.000
ENSGMOG00000018613 Gadus morhua ENSGMOG00000018613 I 0.000
TBX10 Gorilla gorilla ENSGGOG00000011961 I 0.000
ENSGALG00000003599 Gallus gallus ENSGALG00000003599 I 0.000
L596_g22450 Steinernema carpocapsae L596_g22450 N 0.000
L892_g7838 Steinernema scapterisci L892_g7838 N 0.000
L898_g16606 Steinernema monticolum L898_g16606 N 0.000