POPTR_0001s46070 (Populus trichocarpa)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 POPTR_0001s46070 T015483_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.628 0.776
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.538 0.682
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s46070.1 ARID/BRIGHT 214 299

Links

Other ARID/BRIGHT family TFs
Other Populus trichocarpa TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARID6 Arabidopsis thaliana AT1G20910 D 0.538
ARID3 Arabidopsis thaliana AT2G17410 D 0.628
AMTR_s00022p00128600 Amborella trichopoda AMTR_s00022p00128600 I 0.607
AT1G76510 Arabidopsis thaliana AT1G76510 I 0.614
BGIOSGA005739 Oryza indica BGIOSGA005739 I 0.607
BGIOSGA023283 Oryza indica BGIOSGA023283 I 0.628
Bo5g030830 Brassica oleracea Bo5g030830 I 0.573
Bo6g120610 Brassica oleracea Bo6g120610 I 0.614
Bo7g014510 Brassica oleracea Bo7g014510 I 0.498
Bo7g061260 Brassica oleracea Bo7g061260 I 0.538
Bo8g070520 Brassica oleracea Bo8g070520 I 0.573
Bo9g024490 Brassica oleracea Bo9g024490 I 0.628
Bra002058 Brassica rapa Bra002058 I 0.619
Bra012257 Brassica rapa Bra012257 I 0.538
Bra016443 Brassica rapa Bra016443 I 0.573
Bra025855 Brassica rapa Bra025855 I 0.573
Bra037275 Brassica rapa Bra037275 I 0.628
BRADI1G55550 Brachypodium distachyon BRADI1G55550 I 0.592
BRADI3G53270 Brachypodium distachyon BRADI3G53270 I 0.607
F775_06069 Aegilops tauschii F775_06069 I 0.607
fgenesh2_kg.1__2281__AT1G20910.1 Arabidopsis lyrata fgenesh2_kg.1__2281__AT1G20910.1 I 0.538
fgenesh2_kg.2__1939__AT1G76510.1 Arabidopsis lyrata fgenesh2_kg.2__1939__AT1G76510.1 I 0.614
fgenesh2_kg.3__3325__AT2G17410.1 Arabidopsis lyrata fgenesh2_kg.3__3325__AT2G17410.1 I 0.628
GLYMA01G36040 Glycine max GLYMA01G36040 I 0.628
GLYMA04G01560 Glycine max GLYMA04G01560 I 0.628
GLYMA05G10756 Glycine max GLYMA05G10756 I 0.604
GLYMA06G01640 Glycine max GLYMA06G01640 I 0.628
GLYMA09G32820 Glycine max GLYMA09G32820 I 0.628
GLYMA11G09370 Glycine max GLYMA11G09370 I 0.628
GLYMA16G21840 Glycine max GLYMA16G21840 I 0.595
GRMZM2G110109 Zea mays GRMZM2G110109 I 0.607
GRMZM2G180654 Zea mays GRMZM2G180654 I 0.628
GRMZM2G421899 Zea mays GRMZM2G421899 I 0.607
GRMZM5G883993 Zea mays GRMZM5G883993 I 0.628
GSMUA_Achr3G11660_001 Musa acuminata GSMUA_Achr3G11660_001 I 0.572
GSMUA_Achr4G19240_001 Musa acuminata GSMUA_Achr4G19240_001 I 0.630
GSMUA_AchrUn_randomG12940_001 Musa acuminata GSMUA_AchrUn_randomG12940_001 I 0.628
LPERR02G24480 Leersia perrieri LPERR02G24480 I 0.594
LPERR06G17780 Leersia perrieri LPERR06G17780 I 0.451
MTR_3g116200 Medicago truncatula MTR_3g116200 I 0.628
MTR_5g024920 Medicago truncatula MTR_5g024920 I 0.614
OB02G37240 Oryza brachyantha OB02G37240 I 0.607
OB06G29250 Oryza brachyantha OB06G29250 I 0.628
OBART02G30070 Oryza barthii OBART02G30070 I 0.607
OBART06G21220 Oryza barthii OBART06G21220 I 0.577
OGLUM02G30740 Oryza glumaepatula OGLUM02G30740 I 0.607
OGLUM06G22430 Oryza glumaepatula OGLUM06G22430 I 0.577
OLONG_022248 Oryza longistaminata OLONG_022248 I 0.577
OMERI01G31330 Oryza meridionalis OMERI01G31330 I 0.577
OMERI02G28920 Oryza meridionalis OMERI02G28920 I 0.607
ONIVA02G32840 Oryza nivara ONIVA02G32840 I 0.607
ONIVA06G25180 Oryza nivara ONIVA06G25180 I 0.577
OPUNC02G27630 Oryza punctata OPUNC02G27630 I 0.607
OPUNC06G19340 Oryza punctata OPUNC06G19340 I 0.438
ORGLA02G0256100 Oryza glaberrima ORGLA02G0256100 I 0.607
ORUFI02G31730 Oryza rufipogon ORUFI02G31730 I 0.607
ORUFI06G22870 Oryza rufipogon ORUFI06G22870 I 0.577
OS02G0714300 Oryza sativa OS02G0714300 I 0.607
OS06G0622300 Oryza sativa OS06G0622300 I 0.628
PGSC0003DMG400010001 Solanum tuberosum PGSC0003DMG400010001 I 0.628
PGSC0003DMG400021771 Solanum tuberosum PGSC0003DMG400021771 I 0.600
POPTR_0002s00550 Populus trichocarpa POPTR_0002s00550 I 0.628
POPTR_0004s21870 Populus trichocarpa POPTR_0004s21870 I 0.628
POPTR_0011s14850 Populus trichocarpa POPTR_0011s14850 I 0.727
PRUPE_ppa001071mg Prunus persica PRUPE_ppa001071mg I 0.614
PRUPE_ppa003469mg Prunus persica PRUPE_ppa003469mg I 0.628
PRUPE_ppa006712mg Prunus persica PRUPE_ppa006712mg I 0.614
Sb04g029990 Sorghum bicolor Sb04g029990 I 0.607
Sb10g024400 Sorghum bicolor Sb10g024400 I 0.628
SELMODRAFT_271464 Selaginella moellendorffii SELMODRAFT_271464 I 0.629
SELMODRAFT_445202 Selaginella moellendorffii SELMODRAFT_445202 I 0.629
Si006372m.g Setaria italica Si006372m.g I 0.628
Si017073m.g Setaria italica Si017073m.g I 0.607
Solyc04g082820.2 Solanum lycopersicum Solyc04g082820.2 I 0.628
Solyc12g094730.1 Solanum lycopersicum Solyc12g094730.1 I 0.592
TCM_007605 Theobroma cacao TCM_007605 I 0.614
TCM_034809 Theobroma cacao TCM_034809 I 0.628
Traes_2AS_49D6010DA1 Triticum aestivum Traes_2AS_49D6010DA1 I 0.628
Traes_2BS_B3411790F Triticum aestivum Traes_2BS_B3411790F I 0.628
Traes_2DL_C465ACBE4 Triticum aestivum Traes_2DL_C465ACBE4 I 0.628
Traes_6AL_D304A3C3B Triticum aestivum Traes_6AL_D304A3C3B I 0.607
Traes_6BL_936B5B999 Triticum aestivum Traes_6BL_936B5B999 I 0.607
Traes_6DL_E6E385C31 Triticum aestivum Traes_6DL_E6E385C31 I 0.607
TRIUR3_34317 Triticum urartu TRIUR3_34317 I 0.607
VIT_04s0044g01840 Vitis vinifera VIT_04s0044g01840 I 0.628
VIT_18s0122g00560 Vitis vinifera VIT_18s0122g00560 I 0.614
Ca_04797 Cicer arietinum Ca_04797 I 0.628
Ca_10698 Cicer arietinum Ca_10698 I 0.628
Cla009111 Citrullus lanatus Cla009111 I 0.628
Pm020703 Prunus mume Pm020703 I 0.614
Pm022898 Prunus mume Pm022898 I 0.614
Pm026967 Prunus mume Pm026967 I 0.628
29682.m000576 Ricinus communis 29682.m000576 I 0.628
30162.m001290 Ricinus communis 30162.m001290 I 0.614
30170.m013806 Ricinus communis 30170.m013806 I 0.628
cassava10018.m1 Manihot esculenta cassava10018.m1 I 0.435
cassava23401.valid.m1 Manihot esculenta cassava23401.valid.m1 I 0.628
cassava24840.valid.m1 Manihot esculenta cassava24840.valid.m1 I 0.628
cassava27165.m1 Manihot esculenta cassava27165.m1 I 0.628
Cucsa.323280 Cucumis sativus Cucsa.323280 I 0.628
e_gw1.66.61.1 Physcomitrella patens e_gw1.66.61.1 I 0.629
gw1.131.40.1 Physcomitrella patens gw1.131.40.1 I 0.625
mg023226m Mimulus guttatus mg023226m I 0.616
mgf001698m Mimulus guttatus mgf001698m I 0.628
mgf002691m Mimulus guttatus mgf002691m I 0.628
mgf005009m Mimulus guttatus mgf005009m I 0.606
mgf014392m Mimulus guttatus mgf014392m I 0.616
Aquca_007_00955 Aquilegia coerulea Aquca_007_00955 I 0.594
Bostr.18351s0201 Boechera stricta Bostr.18351s0201 I 0.628
Bostr.20129s0090 Boechera stricta Bostr.20129s0090 I 0.614
Bostr.7128s0681 Boechera stricta Bostr.7128s0681 I 0.525
Cagra.2281s0033 Capsella grandiflora Cagra.2281s0033 I 0.614
Cagra.6160s0006 Capsella grandiflora Cagra.6160s0006 I 0.525
Cagra.6788s0003 Capsella grandiflora Cagra.6788s0003 I 0.628
Carubv10009301m.g Capsella rubella Carubv10009301m.g I 0.525
Carubv10012979m.g Capsella rubella Carubv10012979m.g I 0.628
Carubv10020299m.g Capsella rubella Carubv10020299m.g I 0.614
Ciclev10001099m.g Citrus clementina Ciclev10001099m.g I 0.628
Ciclev10025351m.g Citrus clementina Ciclev10025351m.g I 0.628
Ciclev10030351m.g Citrus clementina Ciclev10030351m.g I 0.614
Eucgr.F01815 Eucalyptus grandis Eucgr.F01815 I 0.628
Eucgr.I01546 Eucalyptus grandis Eucgr.I01546 I 0.606
Eucgr.I02198 Eucalyptus grandis Eucgr.I02198 I 0.628
evm.TU.supercontig_26.2 Carica papaya evm.TU.supercontig_26.2 I 0.614
gene12982-v1.0-hybrid Fragaria vesca gene12982-v1.0-hybrid I 0.429
gene17116-v1.0-hybrid Fragaria vesca gene17116-v1.0-hybrid I 0.628
Gorai.002G112400 Gossypium raimondii Gorai.002G112400 I 0.628
Gorai.003G000800 Gossypium raimondii Gorai.003G000800 I 0.628
Gorai.012G137700 Gossypium raimondii Gorai.012G137700 I 0.614
Lus10001618.g Linum usitatissimum Lus10001618.g I 0.628
Lus10016045.g Linum usitatissimum Lus10016045.g I 0.599
Lus10022981.g Linum usitatissimum Lus10022981.g I 0.628
MDP0000188323 Malus domestica MDP0000188323 I 0.628
MDP0000834789 Malus domestica MDP0000834789 I 0.628
MDP0000890776 Malus domestica MDP0000890776 I 0.614
orange1.1g004663m.g Citrus sinensis orange1.1g004663m.g I 0.614
orange1.1g009744m.g Citrus sinensis orange1.1g009744m.g I 0.628
orange1.1g012780m.g Citrus sinensis orange1.1g012780m.g I 0.628
Pavir.Aa00633 Panicum virgatum Pavir.Aa00633 I 0.607
Pavir.Ab03084 Panicum virgatum Pavir.Ab03084 I 0.607
Pavir.Db00824 Panicum virgatum Pavir.Db00824 I 0.628
SapurV1A.0016s0160 Salix purpurea SapurV1A.0016s0160 I 0.628
SapurV1A.0047s0480 Salix purpurea SapurV1A.0047s0480 I 0.727
SapurV1A.0478s0090 Salix purpurea SapurV1A.0478s0090 I 0.762
SapurV1A.0554s0250 Salix purpurea SapurV1A.0554s0250 I 0.628
Thhalv10007750m.g Eutrema salsugineum Thhalv10007750m.g I 0.538
Thhalv10018578m.g Eutrema salsugineum Thhalv10018578m.g I 0.614
Thhalv10022553m.g Eutrema salsugineum Thhalv10022553m.g I 0.628
PK02181.1 Cannabis sativa PK02181.1 I 0.614
PK12537.1 Cannabis sativa PK12537.1 I 0.628
chr1.CM0150.370.nc Lotus japonicus chr1.CM0150.370.nc I 0.628
PDK_20s1315201g001 Phoenix dactylifera PDK_20s1315201g001 I 0.605
PDK_20s1326081g004 Phoenix dactylifera PDK_20s1326081g004 I 0.607