scaffold_200704.1 (Arabidopsis lyrata)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 scaffold_200704.1 T024731_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC5
M06717_2.00 		Arabidopsis thaliana
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT		 Dap-seq
OMalley et al.(2016)
BPC5_col_a 		0.855 0.855
BPC5
M06718_2.00 		Arabidopsis thaliana
RRRRVNRRGAGARAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTYTCTCYYNBYYYY		 Dap-seq
OMalley et al.(2016)
BPC5_colamp_a 		0.855 0.855
BPC6
M06719_2.00 		Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM		 Dap-seq
OMalley et al.(2016)
BPC6_col_a 		0.709 0.709
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_200704.1 BBR 1 55

Links

Other BBR family TFs
Other Arabidopsis lyrata TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OPUNC01G03310 Oryza punctata OPUNC01G03310 I
fgeneshCV_pg.C_scaffold_1000277 Chlorella vulgaris fgeneshCV_pg.C_scaffold_1000277 I
orange1.1g021851m.g Citrus sinensis orange1.1g021851m.g I
Genemark1.422_g Coccomyxa subellipsoidea C169 Genemark1.422_g I
Ciclev10020130m.g Citrus clementina Ciclev10020130m.g I
TRIUR3_06252 Triticum urartu TRIUR3_06252 I
Si002704m.g Setaria italica Si002704m.g I
Sb03g005480 Sorghum bicolor Sb03g005480 I
OS01G0156000 Oryza sativa OS01G0156000 I
ORUFI01G03800 Oryza rufipogon ORUFI01G03800 I
ORGLA01G0032300 Oryza glaberrima ORGLA01G0032300 I
BGIOSGA002364 Oryza indica BGIOSGA002364 I
ONIVA01G04110 Oryza nivara ONIVA01G04110 I
OMERI01G03530 Oryza meridionalis OMERI01G03530 I
OGLUM01G03980 Oryza glumaepatula OGLUM01G03980 I
OBART01G03720 Oryza barthii OBART01G03720 I
MLOC_59912 Hordeum vulgare MLOC_59912 I
LPERR05G03900 Leersia perrieri LPERR05G03900 I
LPERR01G03340 Leersia perrieri LPERR01G03340 I
GRMZM2G029850 Zea mays GRMZM2G029850 I
F775_22242 Aegilops tauschii F775_22242 I
BRADI2G34670 Brachypodium distachyon BRADI2G34670 I
BRADI1G34840 Brachypodium distachyon BRADI1G34840 I
Pavir.J37379 Panicum virgatum Pavir.J37379 N
e_gw1.04.00.501.1 Ostreococcus tauri e_gw1.04.00.501.1 N