Gfo_R009655 (Geospiza fortis)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Gfo_R009655 T028001_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBED1
M02771_2.00 		Homo sapiens
HTRTCGCGACATR
YATGTCGCGAYAD		 SELEX
Jolma et al.(2013)
ZBED1_1 		1.000 1.000
ZBED1
M04056_2.00 		Homo sapiens
VTRTCGCGAYAT
ATRTCGCGAYAB		 SELEX
Yin et al.(2017)
ZBED1_eDBD_HT-SELEX 		1.000 1.000
ZBED1
M09776_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DREF_01 		1.000 1.000
ZBED1
M04057_2.00 		Homo sapiens
MTRTCGCGAYAK
MTRTCGCGAYAK		 SELEX
Yin et al.(2017)
ZBED1_eDBD_Methyl-HT-SELEX 		1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R009655 BED ZF 23 72

Links

Other BED ZF family TFs
Other Geospiza fortis TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZBED1 Homo sapiens ENSG00000214717 D 1.000
Brh_R008630 Buceros rhinoceros Brh_R008630 I 1.000
ZBED1 Oryctolagus cuniculus ENSOCUG00000023740 I 0.977
ENSONIG00000007347 Oreochromis niloticus ENSONIG00000007347 I 0.909
ENSPANG00000011132 Papio anubis ENSPANG00000011132 I 1.000
ENSPPYG00000020088 Pongo abelii ENSPPYG00000020088 I 1.000
ENSPSIG00000002047 Pelodiscus sinensis ENSPSIG00000002047 I 1.000
ENSSHAG00000012608 Sarcophilus harrisii ENSSHAG00000012608 I 1.000
Aan_R008132 Calypte anna Aan_R008132 I 1.000
Afo_R005396 Aptenodytes forsteri Afo_R005396 I 1.000
ZBED1 Ornithorhynchus anatinus ENSOANG00000010515 I 1.000
Cmyd_10021612 Chelonia mydas Cmyd_10021612 I 1.000
ENSP00000370620-D1 Bos grunniens ENSP00000370620-D1 I 0.977
ENSP00000370620 Macaca fascicularis ENSP00000370620 I 1.000
Pvit_08935 Pogona vitticeps Pvit_08935 I 1.000
Tal_R000939 Tyto alba Tal_R000939 I 1.000
XP_002933665 Xenopus tropicalis XP_002933665 I 1.000
XP_002941050 Xenopus tropicalis XP_002941050 I 1.000
ZBED1 Gorilla gorilla ENSGGOG00000011706 I 1.000
ENSAMEG00000018666 Ailuropoda melanoleuca ENSAMEG00000018666 I 1.000
ENSAPLG00000011428 Anas platyrhynchos ENSAPLG00000011428 I 1.000
ZBED1 Bos taurus ENSBTAG00000024641 I 0.977
ENSCSAG00000019527 Chlorocebus sabaeus ENSCSAG00000019527 I 1.000
ZBED1 Dasypus novemcinctus ENSDNOG00000012869 I 1.000
ENSFALG00000015033 Ficedula albicollis ENSFALG00000015033 I 1.000
ZBED1 Felis catus ENSFCAG00000012522 I 1.000
ENSGALG00000028601 Gallus gallus ENSGALG00000028601 I 1.000
ENSOARG00000008137 Ovis aries ENSOARG00000008137 I 0.977
ENSLACG00000011306 Latimeria chalumnae ENSLACG00000011306 I 0.955
ZBED1 Loxodonta africana ENSLAFG00000013332 I 1.000
ENSLOCG00000017415 Lepisosteus oculatus ENSLOCG00000017415 I 0.977
ZBED1 Meleagris gallopavo ENSMGAG00000015483 I 1.000
ZBED1 Macaca mulatta ENSMMUG00000007514 I 1.000
ENSNLEG00000018727 Nomascus leucogenys ENSNLEG00000018727 I 1.000
ZBED1 Anolis carolinensis ENSACAG00000023513 I 1.000