Pavir.Ba00900 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.Ba00900 T028435_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba00900.1.p BED ZF 26 74

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb05g007535 Sorghum bicolor Sb05g007535 N 0.929
Thhalv10002303m.g Eutrema salsugineum Thhalv10002303m.g N 0.730
Pavir.J25423 Panicum virgatum Pavir.J25423 N 0.714
Pavir.J15543 Panicum virgatum Pavir.J15543 N 0.786
Pavir.Ib02562 Panicum virgatum Pavir.Ib02562 N 0.952
Pavir.Hb01581 Panicum virgatum Pavir.Hb01581 N 0.833
Pavir.Hb01043 Panicum virgatum Pavir.Hb01043 N 0.881
Pavir.Ba02755 Panicum virgatum Pavir.Ba02755 N 0.714
Pavir.Ab01384 Panicum virgatum Pavir.Ab01384 N 0.810
Sb10g011520 Sorghum bicolor Sb10g011520 N 0.738
Sb08g005616 Sorghum bicolor Sb08g005616 N 0.795
Sb07g014876 Sorghum bicolor Sb07g014876 N 0.762
GRMZM2G362557 Zea mays GRMZM2G362557 N 0.905
Sb05g004780 Sorghum bicolor Sb05g004780 N 0.905
Sb04g017410 Sorghum bicolor Sb04g017410 N 0.786
Sb04g008820 Sorghum bicolor Sb04g008820 N 0.929
Sb02g013136 Sorghum bicolor Sb02g013136 N 0.881
Sb02g011140 Sorghum bicolor Sb02g011140 N 0.738
Sb01g047190 Sorghum bicolor Sb01g047190 N 0.738
Sb01g027440 Sorghum bicolor Sb01g027440 N 0.738
Sb01g024553 Sorghum bicolor Sb01g024553 N 0.881
Sb01g013490 Sorghum bicolor Sb01g013490 N 0.795
GRMZM2G454472 Zea mays GRMZM2G454472 N 0.762