Pavir.Eb01543 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.Eb01543 T028472_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb01543.1.p BED ZF 2 47
Pavir.Eb01543.1.p BED ZF 139 184
Pavir.Eb01543.1.p BED ZF 303 347
Pavir.Eb01543.1.p BED ZF 424 469

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG13549 Caenorhabditis briggsae CBG13549 D
elt-6 Caenorhabditis elegans WBGene00001253 D
OFLC_0000492601 Onchocerca flexuosa OFLC_0000492601 I
L596_g25881 Steinernema carpocapsae L596_g25881 I
L889_g31947 Steinernema feltiae L889_g31947 I
L892_g6412 Steinernema scapterisci L892_g6412 I
L893_g28710 Steinernema glaseri L893_g28710 I
L898_g8209 Steinernema monticolum L898_g8209 I
maker-nMf.1.1.scaf08707-augustus-gene-0.3 Meloidogyne floridensis maker-nMf.1.1.scaf08707-augustus-gene-0.3 I
nAv.1.0.1.g03924 Acanthocheilonema viteae nAv.1.0.1.g03924 I
NBR_0001940901 Nippostrongylus brasiliensis NBR_0001940901 I
nDi.2.2.2.g02293 Dirofilaria immitis nDi.2.2.2.g02293 I
NECAME_05031 Necator americanus NECAME_05031 I
nOo.2.0.1.g08948 Onchocerca ochengi nOo.2.0.1.g08948 I
nRc.2.0.1.g15145 Romanomermis culicivorax nRc.2.0.1.g15145 I
OESDEN_09249 Oesophagostomum dentatum OESDEN_09249 I
Hba_15007 Heterorhabditis bacteriophora Hba_15007 I
PTRK_0001379700 Parastrongyloides trichosuri PTRK_0001379700 I
RSKR_0000556500 Rhabditophanes kr3021 RSKR_0000556500 I
SBAD_0000818101 Soboliphyme baturini SBAD_0000818101 I
scaffold1024-EXSNAP2012.4 Pristionchus exspectatus scaffold1024-EXSNAP2012.4 I
scaffold1033-EXSNAP2012.2 Pristionchus exspectatus scaffold1033-EXSNAP2012.2 I
SMUV_0001093901 Syphacia muris SMUV_0001093901 I
SPAL_0001590300 Strongyloides papillosus SPAL_0001590300 I
SSTP_0001171300 Strongyloides stercoralis SSTP_0001171300 I
SVE_0995400 Strongyloides venezuelensis SVE_0995400 I
TCLT_0000574501 Thelazia callipaeda TCLT_0000574501 I
ACAC_0000752101 Angiostrongylus cantonensis ACAC_0000752101 I
Bm4254 Brugia malayi Bm4254 I
CBG13548 Caenorhabditis briggsae CBG13548 I
CBN10937 Caenorhabditis brenneri CBN10937 I
CJA11149 Caenorhabditis japonica CJA11149 I
CJA18864 Caenorhabditis japonica CJA18864 I
CRE31380 Caenorhabditis remanei CRE31380 I
CRE31381 Caenorhabditis remanei CRE31381 I
LOAG_07460 Loa loa LOAG_07460 I
egl-18 Caenorhabditis elegans WBGene00001186 I
WBGene00241875 Onchocerca volvulus WBGene00241875 I
Minc08374 Meloidogyne incognita Minc08374 I
HCOI01886300 Haemonchus contortus HCOI01886300 I
ACOC_0000580401 Angiostrongylus costaricensis ACOC_0000580401 I
ALUE_0001545901 Ascaris lumbricoides ALUE_0001545901 I
ANCCAN_00554 Ancylostoma caninum ANCCAN_00554 I
ANCCEY_12899 Ancylostoma ceylanicum ANCCEY_12899 I
ASIM_0001333801 Anisakis simplex ASIM_0001333801 I
ASU_04064 Ascaris suum ASU_04064 I
BXY_0772600 Bursaphelenchus xylophilus BXY_0772600 I
DICVIV_08848 Dictyocaulus viviparus DICVIV_08848 I
EVEC_0001284001 Enterobius vermicularis EVEC_0001284001 I
GPLIN_000855200 Globodera pallida GPLIN_000855200 I
WUBG_10387 Wuchereria bancrofti WUBG_10387 I