Pavir.Eb01543 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.Eb01543 T028472_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb01543.1.p BED ZF 2 47
Pavir.Eb01543.1.p BED ZF 139 184
Pavir.Eb01543.1.p BED ZF 303 347
Pavir.Eb01543.1.p BED ZF 424 469

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si000106m.g Setaria italica Si000106m.g N 0.877
Sb03g025310 Sorghum bicolor Sb03g025310 N 0.833
OPUNC01G19360 Oryza punctata OPUNC01G19360 N 0.827
BGIOSGA001450 Oryza indica BGIOSGA001450 N 0.815
OGLUM01G22570 Oryza glumaepatula OGLUM01G22570 N 0.815
ONIVA01G21500 Oryza nivara ONIVA01G21500 N 0.815
ORUFI01G21360 Oryza rufipogon ORUFI01G21360 N 0.815
OS01G0547200 Oryza sativa OS01G0547200 N 0.815
OBART01G18970 Oryza barthii OBART01G18970 N 0.809
OLONG_002006 Oryza longistaminata OLONG_002006 N 0.809
LPERR01G16460 Leersia perrieri LPERR01G16460 N 0.784
OB01G28790 Oryza brachyantha OB01G28790 N 0.784