TCF4 (Monodelphis domestica)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSMODG00000020455 T035543_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.914 1.000
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.914 1.000
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.914 1.000
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.914 1.000
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.914 1.000
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.914 1.000
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.914 1.000
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.914 1.000
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.912 0.962
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.912 0.962
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.912 0.962
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.912 0.962
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.912 0.962
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.912 0.962
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.912 0.962
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.912 0.962
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.912 0.962
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.912 0.962
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.912 0.962
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.912 0.962
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.912 0.962
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.912 0.962
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.912 0.885
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.912 0.885
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.912 0.885
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.884 0.923
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.884 0.923
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.884 0.923
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.884 0.885
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.884 0.885
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.884 0.885
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.884 0.885
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.884 0.885
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.884 0.885
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.884 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000025593 bHLH 569 622

Links

Other bHLH family TFs
Other Monodelphis domestica TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT3G46070 Arabidopsis thaliana AT3G46070 D
ZAT7 Arabidopsis thaliana AT3G46090 D
ZAT8 Arabidopsis thaliana AT3G46080 I
BGIOSGA004768 Oryza indica BGIOSGA004768 I
BGIOSGA013832 Oryza indica BGIOSGA013832 I
Bo1g067420 Brassica oleracea Bo1g067420 I
Bo2g025350 Brassica oleracea Bo2g025350 I
Bo3g017740 Brassica oleracea Bo3g017740 I
Bo9g140820 Brassica oleracea Bo9g140820 I
Bra006691 Brassica rapa Bra006691 I
Bra006692 Brassica rapa Bra006692 I
Bra019477 Brassica rapa Bra019477 I
Bra020284 Brassica rapa Bra020284 I
BRADI1G03770 Brachypodium distachyon BRADI1G03770 I
BRADI1G03780 Brachypodium distachyon BRADI1G03780 I
BRADI1G03790 Brachypodium distachyon BRADI1G03790 I
BRADI2G23160 Brachypodium distachyon BRADI2G23160 I
BRADI2G54500 Brachypodium distachyon BRADI2G54500 I
F775_17661 Aegilops tauschii F775_17661 I
F775_18608 Aegilops tauschii F775_18608 I
fgenesh2_kg.5__981__AT3G46090.1 Arabidopsis lyrata fgenesh2_kg.5__981__AT3G46090.1 I
GLYMA13G40860 Glycine max GLYMA13G40860 I
GLYMA15G04570 Glycine max GLYMA15G04570 I
GRMZM2G002805 Zea mays GRMZM2G002805 I
GRMZM2G002815 Zea mays GRMZM2G002815 I
GRMZM2G061626 Zea mays GRMZM2G061626 I
GRMZM2G112799 Zea mays GRMZM2G112799 I
GRMZM2G338056 Zea mays GRMZM2G338056 I
GRMZM2G376061 Zea mays GRMZM2G376061 I
GSMUA_Achr10G06730_001 Musa acuminata GSMUA_Achr10G06730_001 I
GSMUA_Achr10G13530_001 Musa acuminata GSMUA_Achr10G13530_001 I
GSMUA_Achr11G02250_001 Musa acuminata GSMUA_Achr11G02250_001 I
GSMUA_Achr11G21920_001 Musa acuminata GSMUA_Achr11G21920_001 I
GSMUA_Achr1G06720_001 Musa acuminata GSMUA_Achr1G06720_001 I
LPERR01G31500 Leersia perrieri LPERR01G31500 I
LPERR03G33240 Leersia perrieri LPERR03G33240 I
MLOC_14920 Hordeum vulgare MLOC_14920 I
MLOC_63032 Hordeum vulgare MLOC_63032 I
MLOC_67028 Hordeum vulgare MLOC_67028 I
MTR_2g096540 Medicago truncatula MTR_2g096540 I
OB03G46010 Oryza brachyantha OB03G46010 I
OBART03G39050 Oryza barthii OBART03G39050 I
OBART05G19310 Oryza barthii OBART05G19310 I
OGLUM01G40530 Oryza glumaepatula OGLUM01G40530 I
OGLUM03G38910 Oryza glumaepatula OGLUM03G38910 I
OGLUM05G20400 Oryza glumaepatula OGLUM05G20400 I
OMERI01G33710 Oryza meridionalis OMERI01G33710 I
OMERI03G35880 Oryza meridionalis OMERI03G35880 I
ONIVA01G41740 Oryza nivara ONIVA01G41740 I
ONIVA03G40720 Oryza nivara ONIVA03G40720 I
ONIVA05G20190 Oryza nivara ONIVA05G20190 I
OPUNC01G35440 Oryza punctata OPUNC01G35440 I
OPUNC01G35470 Oryza punctata OPUNC01G35470 I
OPUNC05G16930 Oryza punctata OPUNC05G16930 I
OPUNC05G16960 Oryza punctata OPUNC05G16960 I
ORGLA01G0304700 Oryza glaberrima ORGLA01G0304700 I
ORGLA03G0358200 Oryza glaberrima ORGLA03G0358200 I
ORGLA05G0167500 Oryza glaberrima ORGLA05G0167500 I
ORUFI05G20520 Oryza rufipogon ORUFI05G20520 I
OS01G0839100 Oryza sativa OS01G0839100 I
OS03G0820400 Oryza sativa OS03G0820400 I
OS05G0460900 Oryza sativa OS05G0460900 I
PGSC0003DMG401030312 Solanum tuberosum PGSC0003DMG401030312 I
Sb01g003280 Sorghum bicolor Sb01g003280 I
Sb03g039270 Sorghum bicolor Sb03g039270 I
Sb05g027450 Sorghum bicolor Sb05g027450 I
Sb10g031270 Sorghum bicolor Sb10g031270 I
scaffold_501490.1 Arabidopsis lyrata scaffold_501490.1 I
Si003051m.g Setaria italica Si003051m.g I
Si008395m.g Setaria italica Si008395m.g I
Si026973m.g Setaria italica Si026973m.g I
Si027432m.g Setaria italica Si027432m.g I
Si037251m.g Setaria italica Si037251m.g I
Si037672m.g Setaria italica Si037672m.g I
Solyc06g075780.1 Solanum lycopersicum Solyc06g075780.1 I
Solyc11g073060.1 Solanum lycopersicum Solyc11g073060.1 I
TRAES3BF127400030CFD_g Triticum aestivum TRAES3BF127400030CFD_g I
Traes_5BL_3B50B6963 Triticum aestivum Traes_5BL_3B50B6963 I
Traes_5BL_8DB8274DB1 Triticum aestivum Traes_5BL_8DB8274DB1 I
Traes_5BL_B038BE0A3 Triticum aestivum Traes_5BL_B038BE0A3 I
Traes_5BL_BB99746DD Triticum aestivum Traes_5BL_BB99746DD I
Traes_5DL_4B4927090 Triticum aestivum Traes_5DL_4B4927090 I
Traes_5DL_50E35B4F3 Triticum aestivum Traes_5DL_50E35B4F3 I
Traes_5DL_9D713AD9C Triticum aestivum Traes_5DL_9D713AD9C I
Traes_5DL_F269EF70D Triticum aestivum Traes_5DL_F269EF70D I
TRIUR3_12166 Triticum urartu TRIUR3_12166 I
TRIUR3_15911 Triticum urartu TRIUR3_15911 I
Bostr.18473s0333 Boechera stricta Bostr.18473s0333 I
Bostr.26833s0254 Boechera stricta Bostr.26833s0254 I
Cagra.1317s0034 Capsella grandiflora Cagra.1317s0034 I
Cagra.7309s0001 Capsella grandiflora Cagra.7309s0001 I
Cagra.7309s0002 Capsella grandiflora Cagra.7309s0002 I
Carubv10018142m.g Capsella rubella Carubv10018142m.g I
Carubv10018774m.g Capsella rubella Carubv10018774m.g I
Eucgr.B02398 Eucalyptus grandis Eucgr.B02398 I
Pavir.Da00814 Panicum virgatum Pavir.Da00814 I
Pavir.Da00815 Panicum virgatum Pavir.Da00815 I
Pavir.Da01563 Panicum virgatum Pavir.Da01563 I
Pavir.Eb03660 Panicum virgatum Pavir.Eb03660 I
Pavir.Ha00194 Panicum virgatum Pavir.Ha00194 I
Pavir.Hb00003 Panicum virgatum Pavir.Hb00003 I
Pavir.Hb00056 Panicum virgatum Pavir.Hb00056 I
Pavir.Ia00291 Panicum virgatum Pavir.Ia00291 I
Pavir.Ia00294 Panicum virgatum Pavir.Ia00294 I
Pavir.Ib04509 Panicum virgatum Pavir.Ib04509 I
Pavir.J00893 Panicum virgatum Pavir.J00893 I
Pavir.J03079 Panicum virgatum Pavir.J03079 I
Pavir.J04850 Panicum virgatum Pavir.J04850 I
Pavir.J14296 Panicum virgatum Pavir.J14296 I
Pavir.J14338 Panicum virgatum Pavir.J14338 I
Pavir.J30713 Panicum virgatum Pavir.J30713 I
Thhalv10002839m.g Eutrema salsugineum Thhalv10002839m.g I
Thhalv10014884m.g Eutrema salsugineum Thhalv10014884m.g I
Traes_5BL_56E52A2FC Triticum aestivum Traes_5BL_56E52A2FC N
TRIUR3_01057 Triticum urartu TRIUR3_01057 N