FERD3L (Oryzias latipes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSORLG00000004008 T036380_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FERD3L
M04140_2.00 		Homo sapiens
GYVACAGCTGKYRC
GYRMCAGCTGTBRC		 SELEX
Yin et al.(2017)
FERD3L_FL_HT-SELEX_1 		0.879 0.923
FERD3L
M04141_2.00 		Homo sapiens
GTRMCAKMTGKYRC
GYRMCAKMTGKYAC		 SELEX
Yin et al.(2017)
FERD3L_FL_HT-SELEX_2 		0.879 0.923
FERD3L
M04142_2.00 		Homo sapiens
GTVACAGCTGKYRC
GYRMCAGCTGTBAC		 SELEX
Yin et al.(2017)
FERD3L_FL_Methyl-HT-SELEX_1 		0.879 0.923
FERD3L
M04143_2.00 		Homo sapiens
GTRMCAKMTGKYRC
GYRMCAKMTGKYAC		 SELEX
Yin et al.(2017)
FERD3L_FL_Methyl-HT-SELEX_2 		0.879 0.923
Fer3
M05993_2.00 		Drosophila melanogaster
GKVACAGVTG
CABCTGTBMC		 B1H
Zhu et al.(2011)
Fer3_da_SANGER_5_FBgn0037937 		0.855 0.865
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000005008 bHLH 71 123

Links

Other bHLH family TFs
Other Oryzias latipes TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_7AL_5E9E6A334 Triticum aestivum Traes_7AL_5E9E6A334 N
Cucsa.134530 Cucumis sativus Cucsa.134530 N
Cucsa.048750 Cucumis sativus Cucsa.048750 N
cassava11490.m1 Manihot esculenta cassava11490.m1 N
29417.m000034 Ricinus communis 29417.m000034 N
Pm010795 Prunus mume Pm010795 N
Cla019628 Citrullus lanatus Cla019628 N
Cla010042 Citrullus lanatus Cla010042 N
VIT_01s0011g01410 Vitis vinifera VIT_01s0011g01410 N
TRIUR3_33737 Triticum urartu TRIUR3_33737 N
TRIUR3_32978 Triticum urartu TRIUR3_32978 N
Traes_7DL_B446D4CC6 Triticum aestivum Traes_7DL_B446D4CC6 N
Aquca_016_00081 Aquilegia coerulea Aquca_016_00081 N
Traes_6DS_CA4C01DEF Triticum aestivum Traes_6DS_CA4C01DEF N
Traes_6BS_4DA724E79 Triticum aestivum Traes_6BS_4DA724E79 N
TCM_006017 Theobroma cacao TCM_006017 N
Solyc07g007320.1 Solanum lycopersicum Solyc07g007320.1 N
Si018139m.g Setaria italica Si018139m.g N
Si007394m.g Setaria italica Si007394m.g N
Sb10g026620 Sorghum bicolor Sb10g026620 N
Sb04g004830 Sorghum bicolor Sb04g004830 N
PRUPE_ppa024886mg Prunus persica PRUPE_ppa024886mg N
POPTR_0003s07310 Populus trichocarpa POPTR_0003s07310 N
Pavir.Ab00578 Panicum virgatum Pavir.Ab00578 N
PDK_20s1530701g001 Phoenix dactylifera PDK_20s1530701g001 N
LjSGA_033751.1 Lotus japonicus LjSGA_033751.1 N
PK04104.1 Cannabis sativa PK04104.1 N
Thhalv10009789m.g Eutrema salsugineum Thhalv10009789m.g N
SapurV1A.0210s0200 Salix purpurea SapurV1A.0210s0200 N
SapurV1A.0104s0310 Salix purpurea SapurV1A.0104s0310 N
Pavir.J35161 Panicum virgatum Pavir.J35161 N
Pavir.Db00476 Panicum virgatum Pavir.Db00476 N
Pavir.Da00255 Panicum virgatum Pavir.Da00255 N
Pavir.Ab00641 Panicum virgatum Pavir.Ab00641 N
POPTR_0001s15920 Populus trichocarpa POPTR_0001s15920 N
Pavir.Aa03378 Panicum virgatum Pavir.Aa03378 N
orange1.1g048158m.g Citrus sinensis orange1.1g048158m.g N
MDP0000891068 Malus domestica MDP0000891068 N
evm.TU.supercontig_30.133 Carica papaya evm.TU.supercontig_30.133 N
Eucgr.E04309 Eucalyptus grandis Eucgr.E04309 N
Eucgr.D00032 Eucalyptus grandis Eucgr.D00032 N
Ciclev10016385m.g Citrus clementina Ciclev10016385m.g N
Carubv10011663m.g Capsella rubella Carubv10011663m.g N
Cagra.1508s0089 Capsella grandiflora Cagra.1508s0089 N
Bostr.15697s0409 Boechera stricta Bostr.15697s0409 N
GLYMA05G26271 Glycine max GLYMA05G26271 N
GSMUA_Achr8G33510_001 Musa acuminata GSMUA_Achr8G33510_001 N
GSMUA_Achr7G03600_001 Musa acuminata GSMUA_Achr7G03600_001 N
GSMUA_Achr6G35220_001 Musa acuminata GSMUA_Achr6G35220_001 N
GSMUA_Achr6G20140_001 Musa acuminata GSMUA_Achr6G20140_001 N
GSMUA_Achr2G02580_001 Musa acuminata GSMUA_Achr2G02580_001 N
GSMUA_Achr1G09990_001 Musa acuminata GSMUA_Achr1G09990_001 N
GRMZM2G017882 Zea mays GRMZM2G017882 N
GLYMA15G17040 Glycine max GLYMA15G17040 N
GLYMA09G05781 Glycine max GLYMA09G05781 N
GLYMA08G09191 Glycine max GLYMA08G09191 N
GSMUA_Achr9G22490_001 Musa acuminata GSMUA_Achr9G22490_001 N
fgenesh1_pm.C_scaffold_1002523 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002523 N
BRADI3G05380 Brachypodium distachyon BRADI3G05380 N
BRADI1G32050 Brachypodium distachyon BRADI1G32050 N
Bra038403 Brassica rapa Bra038403 N
Bra014899 Brassica rapa Bra014899 N
Bo7g041160 Brassica oleracea Bo7g041160 N
Bo2g121040 Brassica oleracea Bo2g121040 N
BGIOSGA023427 Oryza indica BGIOSGA023427 N
BGIOSGA007635 Oryza indica BGIOSGA007635 N
AT1G31040 Arabidopsis thaliana AT1G31040 N
OLONG_011712 Oryza longistaminata OLONG_011712 N
OS06G0666100 Oryza sativa OS06G0666100 N
OS02G0172800 Oryza sativa OS02G0172800 N
ORUFI02G05620 Oryza rufipogon ORUFI02G05620 N
ORGLA06G0201700 Oryza glaberrima ORGLA06G0201700 N
OPUNC06G21750 Oryza punctata OPUNC06G21750 N
OPUNC02G04680 Oryza punctata OPUNC02G04680 N
ONIVA03G43780 Oryza nivara ONIVA03G43780 N
ONIVA02G05860 Oryza nivara ONIVA02G05860 N
OMERI06G23930 Oryza meridionalis OMERI06G23930 N
OLONG_022199 Oryza longistaminata OLONG_022199 N
AMTR_s00032p00241350 Amborella trichopoda AMTR_s00032p00241350 N
OGLUM06G25260 Oryza glumaepatula OGLUM06G25260 N
OGLUM02G05380 Oryza glumaepatula OGLUM02G05380 N
OBART06G24000 Oryza barthii OBART06G24000 N
OBART02G05520 Oryza barthii OBART02G05520 N
OB02G14750 Oryza brachyantha OB02G14750 N
MLOC_21744 Hordeum vulgare MLOC_21744 N
LPERR06G19930 Leersia perrieri LPERR06G19930 N
LPERR02G04770 Leersia perrieri LPERR02G04770 N
GSMUA_AchrUn_randomG23740_001 Musa acuminata GSMUA_AchrUn_randomG23740_001 N
GSMUA_Achr9G30790_001 Musa acuminata GSMUA_Achr9G30790_001 N