her9 (Tetraodon nigroviridis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTNIG00000015161 T037777_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hes1
M01726_2.00 		Mus musculus
NVCACGYKNN
NNMRCGTGBN		 PBM
Weirauch et al.(2014)
pTH5059 		0.914 0.982
HES1
M04090_2.00 		Homo sapiens
VVCACGYGHM
KDCRCGTGBB		 SELEX
Yin et al.(2017)
HES1_eDBD_HT-SELEX 		0.914 0.982
HES1
M09822_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HES1_Q2 		0.914 0.982
HES1
M09823_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HES1_Q3 		0.914 0.982
HES1
M09824_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HES1_Q4 		0.914 0.982
HES1
M09825_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HES1_Q6 		0.914 0.982
HES1
M04091_2.00 		Homo sapiens
VNYACNYNHN
NDNRNGTRNB		 SELEX
Yin et al.(2017)
HES1_eDBD_Methyl-HT-SELEX 		0.914 0.982
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000018217 bHLH 35 92

Links

Other bHLH family TFs
Other Tetraodon nigroviridis TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Phyra80938 Phytophthora ramorum Phyra80938 D
Physo132943 Phytophthora sojae Physo132943 I
maker-pir_contig_435-fgenesh-gene-0.6 Pythium irregulare maker-pir_contig_435-fgenesh-gene-0.6 I
maker-pir_contig_435-fgenesh-gene-0.7 Pythium irregulare maker-pir_contig_435-fgenesh-gene-0.7 I
maker-pir_contig_548-fgenesh-gene-0.3 Pythium irregulare maker-pir_contig_548-fgenesh-gene-0.3 I
maker-piw_contig_50-fgenesh-gene-0.1 Pythium iwayamai maker-piw_contig_50-fgenesh-gene-0.1 I
maker-pve_contig_1017-fgenesh-gene-0.2 Pythium vexans maker-pve_contig_1017-fgenesh-gene-0.2 I
maker-pve_contig_13-snap-gene-0.46 Pythium vexans maker-pve_contig_13-snap-gene-0.46 I
maker-pve_contig_734-snap-gene-0.9 Pythium vexans maker-pve_contig_734-snap-gene-0.9 I
Phyra87784 Phytophthora ramorum Phyra87784 I
Phyra95260 Phytophthora ramorum Phyra95260 I
Physo132941 Phytophthora sojae Physo132941 I
maker-piw_contig_637-fgenesh-gene-0.5 Pythium iwayamai maker-piw_contig_637-fgenesh-gene-0.5 I
Physo132945 Phytophthora sojae Physo132945 I
Physo132946 Phytophthora sojae Physo132946 I
PITG_14400 Phytophthora infestans PITG_14400 I
PITG_18789 Phytophthora infestans PITG_18789 I
PYU1_G002835 Pythium ultimum PYU1_G002835 I
PYU1_G002849 Pythium ultimum PYU1_G002849 I
estExt_fgenesh1_kg.C_2050026 Phytophthora capsici estExt_fgenesh1_kg.C_2050026 I
estExt_fgenesh1_kg.C_3051400005 Phytophthora capsici estExt_fgenesh1_kg.C_3051400005 I
estExt_Genewise1Plus.C_180162 Phytophthora capsici estExt_Genewise1Plus.C_180162 I
estExt_Genewise1Plus.C_2050016 Phytophthora capsici estExt_Genewise1Plus.C_2050016 I
fgenesh1_kg.C_scaffold_15000102 Phytophthora capsici fgenesh1_kg.C_scaffold_15000102 I
maker-par_contig_2748-snap-gene-0.2 Pythium arrhenomanes maker-par_contig_2748-snap-gene-0.2 I
fgenesh_scip_prom.28083.1909 Phytophthora lateralis fgenesh_scip_prom.28083.1909 I
F443_20703 Phytophthora parasitica F443_20703 I
maker-pag1_scaffold_266-snap-gene-0.11 Pythium aphanidermatum maker-pag1_scaffold_266-snap-gene-0.11 I
fgenesh_scip_prom.28083.5526 Phytophthora lateralis fgenesh_scip_prom.28083.5526 I
F443_20702 Phytophthora parasitica F443_20702 I
F443_20671 Phytophthora parasitica F443_20671 I
F443_19686 Phytophthora parasitica F443_19686 I
fgenesh_scip_prom.46568.7328 Phytophthora kernoviae fgenesh_scip_prom.46568.7328 N
fgenesh_scip_prom.46568.7327 Phytophthora kernoviae fgenesh_scip_prom.46568.7327 N
Physo131337 Phytophthora sojae Physo131337 N
fgenesh_scip_prom.46568.9767 Phytophthora kernoviae fgenesh_scip_prom.46568.9767 N
fgenesh_scip_prom.28083.3854 Phytophthora lateralis fgenesh_scip_prom.28083.3854 N
fgenesh_scip_prom.46568.9768 Phytophthora kernoviae fgenesh_scip_prom.46568.9768 N
Physo132965 Phytophthora sojae Physo132965 N
Physo138282 Phytophthora sojae Physo138282 N
PITG_10310 Phytophthora infestans PITG_10310 N
PYU1_G002832 Pythium ultimum PYU1_G002832 N
fgenesh_scip_prom.28083.11537 Phytophthora lateralis fgenesh_scip_prom.28083.11537 N
PYU1_G002831 Pythium ultimum PYU1_G002831 N
Phyra80925 Phytophthora ramorum Phyra80925 N
PYU1_G002839 Pythium ultimum PYU1_G002839 N
PYU1_G002844 Pythium ultimum PYU1_G002844 N
PYU1_G002847 Pythium ultimum PYU1_G002847 N
estExt_fgenesh1_kg.C_2070034 Phytophthora capsici estExt_fgenesh1_kg.C_2070034 N
estExt_fgenesh1_pm.C_680840001 Phytophthora capsici estExt_fgenesh1_pm.C_680840001 N
F443_16339 Phytophthora parasitica F443_16339 N
F443_03239 Phytophthora parasitica F443_03239 N
F443_00625 Phytophthora parasitica F443_00625 N
maker-piw_contig_6256-fgenesh-gene-0.0 Pythium iwayamai maker-piw_contig_6256-fgenesh-gene-0.0 N
maker-par_contig_2799-snap-gene-0.1 Pythium arrhenomanes maker-par_contig_2799-snap-gene-0.1 N
maker-par_contig_3706-snap-gene-0.1 Pythium arrhenomanes maker-par_contig_3706-snap-gene-0.1 N
maker-par_contig_631-snap-gene-0.2 Pythium arrhenomanes maker-par_contig_631-snap-gene-0.2 N
maker-par_contig_8416-snap-gene-0.0 Pythium arrhenomanes maker-par_contig_8416-snap-gene-0.0 N
maker-par_contig_173-fgenesh-gene-0.2 Pythium arrhenomanes maker-par_contig_173-fgenesh-gene-0.2 N
maker-pag1_scaffold_266-snap-gene-0.7 Pythium aphanidermatum maker-pag1_scaffold_266-snap-gene-0.7 N
maker-pir_contig_516-fgenesh-gene-0.3 Pythium irregulare maker-pir_contig_516-fgenesh-gene-0.3 N
maker-pir_contig_516-fgenesh-gene-0.8 Pythium irregulare maker-pir_contig_516-fgenesh-gene-0.8 N
maker-pir_contig_524-snap-gene-0.12 Pythium irregulare maker-pir_contig_524-snap-gene-0.12 N
maker-pir_contig_524-snap-gene-0.9 Pythium irregulare maker-pir_contig_524-snap-gene-0.9 N
maker-piw_contig_1647-snap-gene-0.3 Pythium iwayamai maker-piw_contig_1647-snap-gene-0.3 N
maker-piw_contig_4506-fgenesh-gene-0.0 Pythium iwayamai maker-piw_contig_4506-fgenesh-gene-0.0 N
maker-pag1_scaffold_266-fgenesh-gene-0.3 Pythium aphanidermatum maker-pag1_scaffold_266-fgenesh-gene-0.3 N
HpaG809807 Hyaloperonospora arabidopsidis HpaG809807 N
ALNC14_029500 Albugo laibachii ALNC14_029500 N
maker-piw_contig_637-snap-gene-0.12 Pythium iwayamai maker-piw_contig_637-snap-gene-0.12 N
maker-piw_contig_841-fgenesh-gene-0.2 Pythium iwayamai maker-piw_contig_841-fgenesh-gene-0.2 N
maker-pag1_scaffold_154-snap-gene-0.26 Pythium aphanidermatum maker-pag1_scaffold_154-snap-gene-0.26 N
maker-pag1_scaffold_154-snap-gene-0.25 Pythium aphanidermatum maker-pag1_scaffold_154-snap-gene-0.25 N
maker-pve_contig_364-fgenesh-gene-0.6 Pythium vexans maker-pve_contig_364-fgenesh-gene-0.6 N
HpaG811464 Hyaloperonospora arabidopsidis HpaG811464 N
maker-pve_contig_871-fgenesh-gene-0.0 Pythium vexans maker-pve_contig_871-fgenesh-gene-0.0 N
Phyra73320 Phytophthora ramorum Phyra73320 N
Phyra73321 Phytophthora ramorum Phyra73321 N
Phyra78879 Phytophthora ramorum Phyra78879 N
Phyra80922 Phytophthora ramorum Phyra80922 N