OPUNC03G33340 (Oryza punctata)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 OPUNC03G33340 T042776_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PIF4
M08046_2.00 		Arabidopsis thaliana
CACGTGSV
BSCACGTG		 ChIP-seq
Mathelier et al.(2014)
MA0561.1 		0.911 0.920
PIF5
M08047_2.00 		Arabidopsis thaliana
YCACRTGS
SCAYGTGR		 ChIP-seq
Mathelier et al.(2014)
MA0562.1 		0.898 0.900
PIF5
M09452_2.00 		Arabidopsis thaliana
NNBCAYGTGV
BCACRTGVNN		 Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062 		0.898 0.900
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.871 0.920
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.871 0.920
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.871 0.920
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.871 0.920
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.871 0.920
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.871 0.920
PIF1
M01703_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8733 		0.868 0.860
PIF1
M08404_2.00 		Arabidopsis thaliana
NCACGTGWSNYNHH
DDNRNSWCACGTGN		 ChIP-chip
Mathelier et al.(2014)
MA0552.1 		0.868 0.860
PIF1
M09783_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PIF1_01 		0.868 0.860
SPT
M01709_2.00 		Arabidopsis thaliana
NCACGTGSN
NSCACGTGN		 PBM
Weirauch et al.(2014)
pTH8111 		0.860 0.840
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.854 0.600
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.854 0.560
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OPUNC03G33340.1 bHLH 357 406
OPUNC03G33340.2 bHLH 354 403
OPUNC03G33340.3 bHLH 218 267
OPUNC03G33340.4 bHLH 218 267
OPUNC03G33340.5 bHLH 218 267

Links

Other bHLH family TFs
Other Oryza punctata TFs

493 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I
LIN28A Otolemur garnettii ENSOGAG00000003971 I
LIN28A Ochotona princeps ENSOPRG00000001591 I
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I
ENSPSIG00000018001 Pelodiscus sinensis ENSPSIG00000018001 I
LIN28A Pteropus vampyrus ENSPVAG00000017267 I
Lin28a Rattus norvegicus ENSRNOG00000060320 I
ENSSHAG00000012716 Sarcophilus harrisii ENSSHAG00000012716 I
LIN28A Sus scrofa ENSSSCG00000003557 I
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I
lin28a Takifugu rubripes ENSTRUG00000009454 I
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I
LIN28A Tursiops truncatus ENSTTRG00000005678 I
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I
Afo_R008930 Aptenodytes forsteri Afo_R008930 I
Brh_R006709 Buceros rhinoceros Brh_R006709 I
Cmyd_10021069 Chelonia mydas Cmyd_10021069 I
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I
ENSP00000254231 Macaca fascicularis ENSP00000254231 I
Gfo_R011576 Geospiza fortis Gfo_R011576 I
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I
Ogr09706 Ophisaurus gracilis Ogr09706 I
Ogr14286 Ophisaurus gracilis Ogr14286 I
yakA12818 Bos grunniens yakA12818 I
LIN28A Loxodonta africana ENSLAFG00000017525 I
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I
LIN28B Bos taurus ENSBTAG00000043973 I
LIN28A Canis familiaris ENSCAFG00000012488 I
LIN28A Callithrix jacchus ENSCJAG00000009796 I
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I
LIN28A Equus caballus ENSECAG00000020267 I
LIN28A Felis catus ENSFCAG00000012810 I
LIN28A Homo sapiens ENSG00000131914 I
LIN28A Gorilla gorilla ENSGGOG00000024918 I
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I
LIN28B Meleagris gallopavo ENSMGAG00000013531 I
LIN28B Myotis lucifugus ENSMLUG00000006883 I
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I
ENSMMUG00000032211 Macaca mulatta ENSMMUG00000032211 I
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I
Lin28a Mus musculus ENSMUSG00000050966 I
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I