POPTR_0005s22870 (Populus trichocarpa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 POPTR_0005s22870 T043812_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PIF4
M08046_2.00 		Arabidopsis thaliana
CACGTGSV
BSCACGTG		 ChIP-seq
Mathelier et al.(2014)
MA0561.1 		0.911 0.900
PIF5
M08047_2.00 		Arabidopsis thaliana
YCACRTGS
SCAYGTGR		 ChIP-seq
Mathelier et al.(2014)
MA0562.1 		0.898 0.880
PIF5
M09452_2.00 		Arabidopsis thaliana
NNBCAYGTGV
BCACRTGVNN		 Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062 		0.898 0.880
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.871 0.920
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.871 0.920
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.871 0.920
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.871 0.920
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.871 0.920
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.871 0.920
PIF1
M01703_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8733 		0.868 0.860
PIF1
M08404_2.00 		Arabidopsis thaliana
NCACGTGWSNYNHH
DDNRNSWCACGTGN		 ChIP-chip
Mathelier et al.(2014)
MA0552.1 		0.868 0.860
PIF1
M09783_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PIF1_01 		0.868 0.860
SPT
M01709_2.00 		Arabidopsis thaliana
NCACGTGSN
NSCACGTGN		 PBM
Weirauch et al.(2014)
pTH8111 		0.860 0.840
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.854 0.600
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.854 0.580
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s22870.1 bHLH 412 461
POPTR_0005s22870.2 bHLH 412 461
POPTR_0005s22870.3 bHLH 412 461
POPTR_0005s22870.4 bHLH 345 394
POPTR_0005s22870.5 bHLH 345 394

Links

Other bHLH family TFs
Other Populus trichocarpa TFs

492 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SJAG_00421 Schizosaccharomyces japonicus SJAG_00421 I
fgeneshPB_pg.12__294 Phycomyces blakesleeanus fgeneshPB_pg.12__294 I
e_gwh1.1.1.994.1 Pichia stipitis e_gwh1.1.1.994.1 I
e_gw1.1.2234.1 Mucor circinelloides e_gw1.1.2234.1 I
e_gw1.11.241.1 Mucor circinelloides e_gw1.11.241.1 I
Traes_5BS_AD70A5AF7 Triticum aestivum Traes_5BS_AD70A5AF7 I
Traes_5AS_03EE89960 Triticum aestivum Traes_5AS_03EE89960 I
Traes_4AL_D48452758 Triticum aestivum Traes_4AL_D48452758 I
SU7_0942 Saccharomyces arboricola SU7_0942 I
SPAPADRAFT_58486 Spathaspora passalidarum SPAPADRAFT_58486 I
SKUD_163604 Saccharomyces kudriavzevii SKUD_163604 I
mgf009543m Mimulus guttatus mgf009543m I
Si039719m.g Setaria italica Si039719m.g I
Si023295m.g Setaria italica Si023295m.g I
SELMODRAFT_37142 Selaginella moellendorffii SELMODRAFT_37142 I
SELMODRAFT_16705 Selaginella moellendorffii SELMODRAFT_16705 I
Sb08g022273 Sorghum bicolor Sb08g022273 I
RHTO_08020 Rhodosporidium toruloides RHTO_08020 I
POPTR_0019s04890 Populus trichocarpa POPTR_0019s04890 I
PNEG_00724 Pneumocystis murina PNEG_00724 I
PICST_38880 Scheffersomyces stipitis PICST_38880 I
OS10G0432300 Oryza sativa OS10G0432300 I
Pavir.Ib03379 Panicum virgatum Pavir.Ib03379 I
PDK_20s1328661g002 Phoenix dactylifera PDK_20s1328661g002 I
tbpl2.L Xenopus laevis XB-GENE-876147 I
PredSwiss_EST785.1 Pneumocystis carinii PredSwiss_EST785.1 I
PredSwiss_CON251.1 Pneumocystis carinii PredSwiss_CON251.1 I
PredSwiss_ASS2010_1907.1 Pneumocystis carinii PredSwiss_ASS2010_1907.1 I
Thhalv10022351m.g Eutrema salsugineum Thhalv10022351m.g I
SapurV1A.0308s0180 Salix purpurea SapurV1A.0308s0180 I
Pavir.J26398 Panicum virgatum Pavir.J26398 I
Pavir.J18057 Panicum virgatum Pavir.J18057 I
Pavir.Ib04166 Panicum virgatum Pavir.Ib04166 I
ORUFI10G11330 Oryza rufipogon ORUFI10G11330 I
orange1.1g029591m.g Citrus sinensis orange1.1g029591m.g I
MDP0000289755 Malus domestica MDP0000289755 I
Gorai.004G244700 Gossypium raimondii Gorai.004G244700 I
Carubv10010337m.g Capsella rubella Carubv10010337m.g I
Cagra.0001s0028 Capsella grandiflora Cagra.0001s0028 I
Bostr.6758s0027 Boechera stricta Bostr.6758s0027 I
Bostr.3640s0136 Boechera stricta Bostr.3640s0136 I
Aquca_037_00296 Aquilegia coerulea Aquca_037_00296 I
Aquca_013_00902 Aquilegia coerulea Aquca_013_00902 I
Bra030855 Brassica rapa Bra030855 I
TBPL2 Microcebus murinus ENSMICG00000000943 I
TBPL2 Meleagris gallopavo ENSMGAG00000013657 I
ENSGMOG00000012435 Gadus morhua ENSGMOG00000012435 I
TBPL2 Gallus gallus ENSGALG00000012145 I
tbp Gasterosteus aculeatus ENSGACG00000016147 I
tbp Danio rerio ENSDARG00000014994 I
ENSAPLG00000006951 Anas platyrhynchos ENSAPLG00000006951 I
ENSAMXG00000003582 Astyanax mexicanus ENSAMXG00000003582 I
CORT_0A11870 Candida orthopsilosis CORT_0A11870 I
BRADI4G01150 Brachypodium distachyon BRADI4G01150 I
ENSONIG00000017061 Oreochromis niloticus ENSONIG00000017061 I
Bra028725 Brassica rapa Bra028725 I
Bo6g051360 Brassica oleracea Bo6g051360 I
Bo3g185290 Brassica oleracea Bo3g185290 I
Bo2g007300 Brassica oleracea Bo2g007300 I
BGIOSGA031868 Oryza indica BGIOSGA031868 I
BGIOSGA013244 Oryza indica BGIOSGA013244 I
TBP2 Arabidopsis thaliana AT1G55520 I
AMTR_s00047p00131170 Amborella trichopoda AMTR_s00047p00131170 I
RO3G_16620 Rhizopus oryzae RO3G_16620 I
RO3G_15549 Rhizopus oryzae RO3G_15549 I
LotgiG129673 Lottia gigantea LotgiG129673 I
ORUFI03G29280 Oryza rufipogon ORUFI03G29280 I
ORGLA10G0095800 Oryza glaberrima ORGLA10G0095800 I
ORGLA06G0285000 Oryza glaberrima ORGLA06G0285000 I
OPUNC01G04710 Oryza punctata OPUNC01G04710 I
ONIVA01G08510 Oryza nivara ONIVA01G08510 I
OMERI10G08240 Oryza meridionalis OMERI10G08240 I
OLONG_010453 Oryza longistaminata OLONG_010453 I
MTR_4g029010 Medicago truncatula MTR_4g029010 I
MLOC_37365 Hordeum vulgare MLOC_37365 I
LPERR10G07850 Leersia perrieri LPERR10G07850 I
CPAG_04505 Candida parapsilosis CPAG_04505 I
LELG_01062 Lodderomyces elongisporus LELG_01062 I
GRMZM2G161418 Zea mays GRMZM2G161418 I
GLOINDRAFT_79885 Rhizophagus irregularis GLOINDRAFT_79885 I
TBP2 Arabidopsis lyrata fgenesh2_kg.1__4564__AT1G55520.2 I
TBPL2 Tursiops truncatus ENSTTRG00000002034 I
trf3 Takifugu rubripes ENSTRUG00000009283 I
tbpl2 Tetraodon nigroviridis ENSTNIG00000002597 I
ENSPMAG00000006175 Petromyzon marinus ENSPMAG00000006175 I
tbp Oryzias latipes ENSORLG00000010757 I