Pavir.J18057 (Panicum virgatum)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 Pavir.J18057 T343188_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.891 0.891
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.891 0.891
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.891 0.891
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.840 0.840
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.840 0.840
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.840 0.840
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.840 0.840
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.840 0.840
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.840 0.840
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.840 0.840
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.840 0.840
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.840 0.840
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.840 0.840
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J18057.1.p TBP 1 43
Pavir.J18057.1.p TBP 51 126

Links

Other TBP family TFs
Other Panicum virgatum TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ib04166 Panicum virgatum Pavir.Ib04166 I 1.000
GRMZM2G161418 Zea mays GRMZM2G161418 I 1.000
Traes_4AL_D48452758 Triticum aestivum Traes_4AL_D48452758 I 1.000
ORUFI03G29280 Oryza rufipogon ORUFI03G29280 I 0.992
BGIOSGA013244 Oryza indica BGIOSGA013244 I 0.992
SapurV1A.0308s0180 Salix purpurea SapurV1A.0308s0180 I 0.992
Gorai.004G244700 Gossypium raimondii Gorai.004G244700 I 0.983
MLOC_37365 Hordeum vulgare MLOC_37365 I 0.983
Traes_5AS_03EE89960 Triticum aestivum Traes_5AS_03EE89960 I 0.983
Sb08g022273 Sorghum bicolor Sb08g022273 I 0.983
Traes_5BS_AD70A5AF7 Triticum aestivum Traes_5BS_AD70A5AF7 I 0.983
POPTR_0019s04890 Populus trichocarpa POPTR_0019s04890 I 0.975
mgf009543m Mimulus guttatus mgf009543m I 0.975
OPUNC01G04710 Oryza punctata OPUNC01G04710 I 0.951
AMTR_s00047p00131170 Amborella trichopoda AMTR_s00047p00131170 I 0.947
Cagra.0001s0028 Capsella grandiflora Cagra.0001s0028 I 0.941
Pavir.Ib03379 Panicum virgatum Pavir.Ib03379 I 0.941
Carubv10010337m.g Capsella rubella Carubv10010337m.g I 0.941
TBP2 Arabidopsis lyrata fgenesh2_kg.1__4564__AT1G55520.2 I 0.941
OMERI10G08240 Oryza meridionalis OMERI10G08240 I 0.933
ONIVA01G08510 Oryza nivara ONIVA01G08510 I 0.933
OS10G0432300 Oryza sativa OS10G0432300 I 0.933
ORGLA10G0095800 Oryza glaberrima ORGLA10G0095800 I 0.933
ORUFI10G11330 Oryza rufipogon ORUFI10G11330 I 0.933
BGIOSGA031868 Oryza indica BGIOSGA031868 I 0.933
Pavir.J26398 Panicum virgatum Pavir.J26398 I 0.927
GRMZM2G149238 Zea mays GRMZM2G149238 I 0.924
Aquca_037_00296 Aquilegia coerulea Aquca_037_00296 I 0.921
Si023295m.g Setaria italica Si023295m.g I 0.921
Bostr.3640s0136 Boechera stricta Bostr.3640s0136 I 0.916
PDK_20s1328661g002 Phoenix dactylifera PDK_20s1328661g002 I 0.909
fgeneshPB_pg.12__294 Phycomyces blakesleeanus fgeneshPB_pg.12__294 I 0.908
e_gw1.11.241.1 Mucor circinelloides e_gw1.11.241.1 I 0.908
GLOINDRAFT_79885 Rhizophagus irregularis GLOINDRAFT_79885 I 0.908
SELMODRAFT_37142 Selaginella moellendorffii SELMODRAFT_37142 I 0.908
SELMODRAFT_16705 Selaginella moellendorffii SELMODRAFT_16705 I 0.908
e_gw1.1.2234.1 Mucor circinelloides e_gw1.1.2234.1 I 0.908
RO3G_16620 Rhizopus oryzae RO3G_16620 I 0.908
ORGLA06G0285000 Oryza glaberrima ORGLA06G0285000 I 0.901
e_gwh1.1.1.994.1 Pichia stipitis e_gwh1.1.1.994.1 I 0.899
Gorai.013G202900 Gossypium raimondii Gorai.013G202900 I 0.899
PICST_38880 Scheffersomyces stipitis PICST_38880 I 0.899
OLONG_010453 Oryza longistaminata OLONG_010453 I 0.893
SU7_0942 Saccharomyces arboricola SU7_0942 I 0.891
SPAPADRAFT_58486 Spathaspora passalidarum SPAPADRAFT_58486 I 0.891
SKUD_163604 Saccharomyces kudriavzevii SKUD_163604 I 0.891
DACRYDRAFT_75233 Dacryopinax sp DACRYDRAFT_75233 I 0.891
CORT_0A11870 Candida orthopsilosis CORT_0A11870 I 0.891
DI09_319p10 Microsporidia sp DI09_319p10 I 0.891
CPAG_04505 Candida parapsilosis CPAG_04505 I 0.891
WALSEDRAFT_33220 Wallemia sebi WALSEDRAFT_33220 I 0.891
J056_000874 Wallemia ichthyophaga J056_000874 I 0.891
LELG_01062 Lodderomyces elongisporus LELG_01062 I 0.891
PV04_08198 Capronia semiimmersa PV04_08198 I 0.882
H102_07668 Trichophyton rubrum H102_07668 I 0.882
H101_08207 Trichophyton interdigitale H101_08207 I 0.882
MCYG_00725 Arthroderma otae MCYG_00725 I 0.882
PV10_01351 Exophiala mesophila PV10_01351 I 0.882
MGYG_01238 Microsporum gypseum MGYG_01238 I 0.882
HCBG_06828 Histoplasma capsulatum HCBG_06828 I 0.882
PDE_04702 Penicillium oxalicum PDE_04702 I 0.882
H105_07693 Trichophyton soudanense H105_07693 I 0.882
tbp1 Schizosaccharomyces pombe SPAC29E6.08 I 0.882
UCREL1_11678 Eutypa lata UCREL1_11678 I 0.882
CPC735_006990 Coccidioides posadasii CPC735_006990 I 0.882
SOCG_04191 Schizosaccharomyces octosporus SOCG_04191 I 0.882
A1Q1_08290 Trichosporon asahii A1Q1_08290 I 0.882
TRV_02367 Trichophyton verrucosum TRV_02367 I 0.882
CIMG_11148 Coccidioides immitis CIMG_11148 I 0.882
BDDG_03170 Blastomyces dermatitidis BDDG_03170 I 0.882
TESG_08364 Trichophyton tonsurans TESG_08364 I 0.882
SPOG_00351 Schizosaccharomyces cryophilus SPOG_00351 I 0.882
PILCRDRAFT_51869 Piloderma croceum PILCRDRAFT_51869 I 0.874
AGABI2DRAFT_44722 Agaricus bisporus AGABI2DRAFT_44722 I 0.874
estExt_fgenesh3_kg.C_20416 Heterobasidion annosum estExt_fgenesh3_kg.C_20416 I 0.874
Thhalv10022351m.g Eutrema salsugineum Thhalv10022351m.g I 0.874
gwh2.1.1035.1 Phanerochaete chrysosporium gwh2.1.1035.1 I 0.874
PHLGIDRAFT_111859 Phlebiopsis gigantea PHLGIDRAFT_111859 I 0.874
PHACADRAFT_256913 Phanerochaete carnosa PHACADRAFT_256913 I 0.874
PV07_11953 Cladophialophora immunda PV07_11953 I 0.874
SCLCIDRAFT_144717 Scleroderma citrinum SCLCIDRAFT_144717 I 0.874
SERLA73DRAFT_76226 Serpula lacrymans SERLA73DRAFT_76226 I 0.874
OLONG_006902 Oryza longistaminata OLONG_006902 I 0.874
PV11_06323 Exophiala sideris PV11_06323 I 0.874
PV09_01314 Verruconis gallopava PV09_01314 I 0.874
Z517_03367 Fonsecaea pedrosoi Z517_03367 I 0.874
PV05_09095 Exophiala xenobiotica PV05_09095 I 0.874
PV06_02313 Exophiala oligosperma PV06_02313 I 0.874
BN946_scf185000.g31 Trametes cinnabarina BN946_scf185000.g31 I 0.874
PISMIDRAFT_684343 Pisolithus microcarpus PISMIDRAFT_684343 I 0.874
FOMPIDRAFT_1017649 Fomitopsis pinicola FOMPIDRAFT_1017649 I 0.874
GALMADRAFT_264138 Galerina marginata GALMADRAFT_264138 I 0.874
HETIRDRAFT_242765 Heterobasidion irregulare HETIRDRAFT_242765 I 0.874
FIBRA_07233 Fibroporia radiculosa FIBRA_07233 I 0.874
M378DRAFT_176716 Amanita muscaria M378DRAFT_176716 I 0.874
Moror_8271 Moniliophthora roreri Moror_8271 I 0.874
Ciclev10022324m.g Citrus clementina Ciclev10022324m.g I 0.867
PIIN_00750 Piriformospora indica PIIN_00750 I 0.866
RHTO_08020 Rhodosporidium toruloides RHTO_08020 I 0.866
MVLG_00350 Microbotryum violaceum MVLG_00350 I 0.866
CMQ_1115 Grosmannia clavigera CMQ_1115 I 0.866
OPUNC03G21560 Oryza punctata OPUNC03G21560 I 0.862
Aquca_124_00015 Aquilegia coerulea Aquca_124_00015 I 0.857
HMEL016424 Heliconius melpomene HMEL016424 I 0.849
MCINX007129 Melitaea cinxia MCINX007129 I 0.849
KGM_04261 Danaus plexippus KGM_04261 I 0.849
PHUM533080 Pediculus humanus PHUM533080 I 0.849
GB47180 Apis mellifera GB47180 I 0.849
ACEP14716 Atta cephalotes ACEP14716 I 0.849
Bo2g007300 Brassica oleracea Bo2g007300 I 0.849
Cflo_04179--XP_623088.1_APIME Camponotus floridanus Cflo_04179--XP_623088.1_APIME I 0.849
GYMLUDRAFT_48721 Gymnopus luxurians GYMLUDRAFT_48721 I 0.843
HHAL004028-PA Halyomorpha halys HHAL004028-PA I 0.840
Lus10031531.g Linum usitatissimum Lus10031531.g I 0.840
ENSPMAG00000006175 Petromyzon marinus ENSPMAG00000006175 I 0.840
VCUG_02118 Vavraia culicis VCUG_02118 I 0.840
SPBR_06113 Sporothrix brasiliensis SPBR_06113 I 0.840
THOM_0429 Trachipleistophora hominis THOM_0429 I 0.840
Bra028725 Brassica rapa Bra028725 I 0.840
ENSOANG00000022637 Ornithorhynchus anatinus ENSOANG00000022637 I 0.833
DAPPUDRAFT_194512 Daphnia pulex DAPPUDRAFT_194512 I 0.832
TC008403 Tribolium castaneum TC008403 I 0.832
TriadG50358 Trichoplax adhaerens TriadG50358 I 0.832
GI18943 Drosophila mojavensis FBgn0141682 I 0.832
EURHEDRAFT_409588 Aspergillus ruber EURHEDRAFT_409588 I 0.827
M438DRAFT_342525 Aureobasidium pullulans M438DRAFT_342525 I 0.827
mgf012063m Mimulus guttatus mgf012063m I 0.827
TBPL2 Meleagris gallopavo ENSMGAG00000013657 I 0.824
NAPIS_ORF01258 Nosema apis NAPIS_ORF01258 I 0.824
LjSGA_031793.1 Lotus japonicus LjSGA_031793.1 I 0.824
SMU15013179 Schmidtea mediterranea SMU15013179 I 0.824
TBPL2 Gallus gallus ENSGALG00000012145 I 0.824
NAPIS_ORF00497 Nosema apis NAPIS_ORF00497 I 0.824
Sb01g017130 Sorghum bicolor Sb01g017130 I 0.824
tbp Oryzias latipes ENSORLG00000010757 I 0.824
M404DRAFT_1000909 Pisolithus tinctorius M404DRAFT_1000909 I 0.819
M408DRAFT_329006 Serendipita vermifera M408DRAFT_329006 I 0.819
M413DRAFT_438675 Hebeloma cylindrosporum M413DRAFT_438675 I 0.819
tbpl2.L Xenopus laevis XB-GENE-876147 I 0.815
H311_04080 Anncaliia algerae H311_04080 I 0.815
ENSAPLG00000006951 Anas platyrhynchos ENSAPLG00000006951 I 0.815
K437DRAFT_258899 Tilletiaria anomala K437DRAFT_258899 I 0.815
TBPL2 Microcebus murinus ENSMICG00000000943 I 0.815
TBPL2 Canis familiaris ENSCAFG00000015052 I 0.807
Aqu1.225918 Amphimedon queenslandica Aqu1.225918 I 0.790
HNAJ_0000219201 Hymenolepis nana HNAJ_0000219201 I 0.790
ML03273a Mnemiopsis leidyi ML03273a I 0.790
HmN_000119900 Hymenolepis microstoma HmN_000119900 I 0.790
Tal_R008176 Tyto alba Tal_R008176 I 0.790
e_gw1.11.176.1 Naegleria gruberi e_gw1.11.176.1 I 0.790
TBPL2 Cavia porcellus ENSCPOG00000006151 I 0.790
ENSOARG00000015944 Ovis aries ENSOARG00000015944 I 0.790
chr1.LjT45A19.110.nd Lotus japonicus chr1.LjT45A19.110.nd I 0.785
ENSECAG00000008702 Equus caballus ENSECAG00000008702 I 0.782
AB04989.1 Alternaria brassicicola AB04989.1 I 0.773
GRMZM2G466938 Zea mays GRMZM2G466938 I 0.773
RSKR_0000436900 Rhabditophanes kr3021 RSKR_0000436900 I 0.773
NAPIS_ORF00498 Nosema apis NAPIS_ORF00498 I 0.771
NAPIS_ORF01257 Nosema apis NAPIS_ORF01257 I 0.771
CAOG_06656 Capsaspora owczarzaki CAOG_06656 I 0.765
PK11932.1 Cannabis sativa PK11932.1 I 0.756
TriadG22173 Trichoplax adhaerens TriadG22173 I 0.756
NBO_6g0091 Nosema bombycis NBO_6g0091 I 0.756
PK25605.1 Cannabis sativa PK25605.1 I 0.755
OLONG_012094 Oryza longistaminata OLONG_012094 I 0.755
PPA00840 Pristionchus pacificus PPA00840 I 0.748
Myotis_brandtii_TBPL2_10011178 Myotis brandtii Myotis_brandtii_TBPL2_10011178 I 0.748
SPBR_07999 Sporothrix brasiliensis SPBR_07999 I 0.748
TBPL2 Gorilla gorilla ENSGGOG00000001055 I 0.740
UREG_07344 Uncinocarpus reesii UREG_07344 I 0.740
DME_0000305201 Dracunculus medinensis DME_0000305201 I 0.731
L596_g25394 Steinernema carpocapsae L596_g25394 I 0.731
ANCDUO_13676 Ancylostoma duodenale ANCDUO_13676 I 0.731
Eucgr.J01752 Eucalyptus grandis Eucgr.J01752 I 0.727
Cla011298 Citrullus lanatus Cla011298 I 0.725
CJA15284 Caenorhabditis japonica CJA15284 I 0.723
D917_07868 Trichinella nativa D917_07868 I 0.723
EFV53163 Trichinella spiralis EFV53163 I 0.723
Contig262.1.g32 Oxytricha trifallax Contig262.1.g32 I 0.723
CRE07760 Caenorhabditis remanei CRE07760 I 0.723
CBG09138 Caenorhabditis briggsae CBG09138 I 0.723
L898_g32593 Steinernema monticolum L898_g32593 I 0.723
ORUFI12G18750 Oryza rufipogon ORUFI12G18750 I 0.715
ONIVA12G15220 Oryza nivara ONIVA12G15220 I 0.715
Aan_R001616 Calypte anna Aan_R001616 I 0.714
TBPL2 Erinaceus europaeus ENSEEUG00000008616 I 0.714
MLOC_44969 Hordeum vulgare MLOC_44969 I 0.713
BRADI1G13220 Brachypodium distachyon BRADI1G13220 I 0.713
Traes_4DS_700213C0B Triticum aestivum Traes_4DS_700213C0B I 0.713
Traes_4BS_4F52653D8 Triticum aestivum Traes_4BS_4F52653D8 I 0.713
Si038805m.g Setaria italica Si038805m.g I 0.713
Cucsa.142180 Cucumis sativus Cucsa.142180 I 0.713
Sb01g012880 Sorghum bicolor Sb01g012880 I 0.713
BRADI4G01150 Brachypodium distachyon BRADI4G01150 I 0.711
Pm000066 Prunus mume Pm000066 I 0.711
F775_26897 Aegilops tauschii F775_26897 I 0.709
TRIUR3_20012 Triticum urartu TRIUR3_20012 I 0.709
POPTR_0013s05580 Populus trichocarpa POPTR_0013s05580 I 0.707
GLYMA09G41330 Glycine max GLYMA09G41330 I 0.707
ORGLA03G0260300 Oryza glaberrima ORGLA03G0260300 I 0.707
OMERI03G24790 Oryza meridionalis OMERI03G24790 I 0.707
OB03G33310 Oryza brachyantha OB03G33310 I 0.707
OPUNC12G15370 Oryza punctata OPUNC12G15370 I 0.707
GLYMA18G44460 Glycine max GLYMA18G44460 I 0.707
OPUNC03G25660 Oryza punctata OPUNC03G25660 I 0.707
LPERR12G14180 Leersia perrieri LPERR12G14180 I 0.707
ONIVA03G29180 Oryza nivara ONIVA03G29180 I 0.707
OMERI11G15350 Oryza meridionalis OMERI11G15350 I 0.707
OGLUM12G18540 Oryza glumaepatula OGLUM12G18540 I 0.707
LjT45I18.100.nd Lotus japonicus LjT45I18.100.nd I 0.707
ORGLA12G0202200 Oryza glaberrima ORGLA12G0202200 I 0.707
OB03G33300 Oryza brachyantha OB03G33300 I 0.707
OS12G0580300 Oryza sativa OS12G0580300 I 0.707
TBP2 Oryza sativa OS03G0657000 I 0.707
OBART03G28150 Oryza barthii OBART03G28150 I 0.707
OGLUM03G28780 Oryza glumaepatula OGLUM03G28780 I 0.707
OBART12G16890 Oryza barthii OBART12G16890 I 0.707
PDK_20s1536561g001 Phoenix dactylifera PDK_20s1536561g001 I 0.706
MTR_3g065900 Medicago truncatula MTR_3g065900 N 0.706
orange1.1g029591m.g Citrus sinensis orange1.1g029591m.g I 0.705
TCM_026453 Theobroma cacao TCM_026453 I 0.705
gene04978-v1.0-hybrid Fragaria vesca gene04978-v1.0-hybrid N 0.703
MTR_7g072580 Medicago truncatula MTR_7g072580 I 0.701
PDK_20s1715251g002 Phoenix dactylifera PDK_20s1715251g002 I 0.701
PRUPE_ppa011711mg Prunus persica PRUPE_ppa011711mg I 0.701
GLYMA16G25450 Glycine max GLYMA16G25450 I 0.701
29950.m001154 Ricinus communis 29950.m001154 I 0.701
cassava22625.valid.m1 Manihot esculenta cassava22625.valid.m1 I 0.701
cassava35684.valid.m1 Manihot esculenta cassava35684.valid.m1 I 0.701
F775_26235 Aegilops tauschii F775_26235 I 0.701
Gorai.007G288000 Gossypium raimondii Gorai.007G288000 I 0.701
GLYMA03G04500 Glycine max GLYMA03G04500 I 0.701
GSMUA_Achr7G01480_001 Musa acuminata GSMUA_Achr7G01480_001 I 0.701
GLYMA19G28780 Glycine max GLYMA19G28780 I 0.701
AMTR_s00064p00125250 Amborella trichopoda AMTR_s00064p00125250 I 0.701
SapurV1A.0680s0010 Salix purpurea SapurV1A.0680s0010 I 0.701
BGIOSGA037671 Oryza indica BGIOSGA037671 I 0.701