Afo_R014913 (Aptenodytes forsteri)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Afo_R014913 T046611_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf21
M01746_2.00 		Mus musculus
RMCAKMTGK
MCAKMTGKY		 PBM
Weirauch et al.(2014)
pTH5087 		0.914 1.000
Tcf21
M02819_2.00 		Mus musculus
VNAACAGCTGTTVN
NBAACAGCTGTTNB		 SELEX
Jolma et al.(2013)
Tcf21_1 		0.914 1.000
TCF21
M04092_2.00 		Homo sapiens
BAACAGCTGBYN
NRVCAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_1 		0.914 1.000
TCF21
M04093_2.00 		Homo sapiens
NRCCATATGKYV
BRMCATATGGYN		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_2 		0.914 1.000
TCF21
M04094_2.00 		Homo sapiens
BAACAGCTGTYV
BRACAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_1 		0.914 1.000
TCF21
M04095_2.00 		Homo sapiens
BACCATATGKYV
BRMCATATGGTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_2 		0.914 1.000
Msc
M01730_2.00 		Mus musculus
NVCRKMYGBN
NVCRKMYGBN		 PBM
Weirauch et al.(2014)
pTH5112 		0.914 0.981
MSC
M02801_2.00 		Homo sapiens
AACAGCTGTT
AACAGCTGTT		 SELEX
Jolma et al.(2013)
MSC_1 		0.914 0.981
MSC
M04183_2.00 		Homo sapiens
NRMCAGMTGBYN
NRVCAKCTGKYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_1 		0.914 0.981
MSC
M04184_2.00 		Homo sapiens
NRVCAYVTGBYN
NRVCABRTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_2 		0.914 0.981
MSC
M04187_2.00 		Homo sapiens
NRMCAGCTGBYV
BRVCAGCTGKYN		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_1 		0.914 0.981
MSC
M04188_2.00 		Homo sapiens
BRMCATATGKYN
NRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_2 		0.914 0.981
MSC
M04185_2.00 		Homo sapiens
NRVCAGCTGBBN
NVVCAGCTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_1 		0.914 0.981
MSC
M04186_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_2 		0.914 0.981
MSC
M04189_2.00 		Homo sapiens
BRACAGCTGTYV
BRACAGCTGTYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_1 		0.914 0.981
MSC
M04190_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_2 		0.914 0.981
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R014913 bHLH 80 132

Links

Other bHLH family TFs
Other Aptenodytes forsteri TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZAT6 Arabidopsis thaliana AT5G04340 D
ZAT10 Arabidopsis thaliana AT1G27730 D
mgf021094m Mimulus guttatus mgf021094m I
C2H2 Arabidopsis lyrata scaffold_600374.1 I
mgf017082m Mimulus guttatus mgf017082m I
Cucsa.395710 Cucumis sativus Cucsa.395710 I
cassava19892.m1 Manihot esculenta cassava19892.m1 I
cassava14164.m1 Manihot esculenta cassava14164.m1 I
30174.m008818 Ricinus communis 30174.m008818 I
Cla022966 Citrullus lanatus Cla022966 I
Ca_05641 Cicer arietinum Ca_05641 I
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I
Si032711m.g Setaria italica Si032711m.g I
AZF3 Arabidopsis lyrata scaffold_800768.1 I
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I
Cagra.7309s0002 Capsella grandiflora Cagra.7309s0002 I
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I
Carubv10001868m.g Capsella rubella Carubv10001868m.g I
Carubv10018774m.g Capsella rubella Carubv10018774m.g I
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I
Pavir.Ba01050 Panicum virgatum Pavir.Ba01050 I
Pavir.J15191 Panicum virgatum Pavir.J15191 I
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I
AZF3 Arabidopsis thaliana AT5G43170 I
BGIOSGA010468 Oryza indica BGIOSGA010468 I
Bo3g142840 Brassica oleracea Bo3g142840 I
Bo5g052290 Brassica oleracea Bo5g052290 I
Bo7g048650 Brassica oleracea Bo7g048650 I
Bo7g065200 Brassica oleracea Bo7g065200 I
Bo9g181170 Brassica oleracea Bo9g181170 I
Bra009464 Brassica rapa Bra009464 I
Bra010922 Brassica rapa Bra010922 I
Bra032845 Brassica rapa Bra032845 I
Bra033666 Brassica rapa Bra033666 I
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I
Sb02g038070 Sorghum bicolor Sb02g038070 I
GLYMA10G40400 Glycine max GLYMA10G40400 I
LPERR03G21480 Leersia perrieri LPERR03G21480 I
MLOC_51405 Hordeum vulgare MLOC_51405 I
OB03G31780 Oryza brachyantha OB03G31780 I
OBART03G22570 Oryza barthii OBART03G22570 I
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I
OLONG_027628 Oryza longistaminata OLONG_027628 I
OPUNC12G15600 Oryza punctata OPUNC12G15600 I
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I
OS03G0437200 Oryza sativa OS03G0437200 I
OS12G0583700 Oryza sativa OS12G0583700 I
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I
Lus10038929.g Linum usitatissimum Lus10038929.g N