Alligator_sinensis_CCG005947.1 (Alligator sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Alligator_sinensis_CCG005947.1 T046640_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MLX
M01114_2.00 		Monodelphis domestica
NNNCACGTGN
NCACGTGNNN		 PBM
Lambert et al.(2019)
pTH11463 		0.868 0.964
Mlx
M00752_2.00 		Mus musculus
CACGTGNNN
NNNCACGTG		 PBM
Weirauch et al.(2013)
pTH2882 		0.868 0.945
Mlx
M01721_2.00 		Mus musculus
NCRCGTGNNN
NNNCACGYGN		 PBM
Weirauch et al.(2014)
pTH5070 		0.868 0.945
MLX
M02779_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Jolma et al.(2013)
MLX_1 		0.868 0.945
Mlx
M02815_2.00 		Mus musculus
RTCACGTGAY
RTCACGTGAY		 SELEX
Jolma et al.(2013)
Mlx_1 		0.868 0.945
MLX
M04080_2.00 		Homo sapiens
NCACGTGN
NCACGTGN		 SELEX
Yin et al.(2017)
MLX_eDBD_HT-SELEX 		0.868 0.945
MLX
M04082_2.00 		Homo sapiens
NVCACGTGVYN
NRBCACGTGBN		 SELEX
Yin et al.(2017)
MLX_FL_HT-SELEX 		0.868 0.945
MLX
M04081_2.00 		Homo sapiens
NCACRTGV
BCAYGTGN		 SELEX
Yin et al.(2017)
MLX_eDBD_Methyl-HT-SELEX 		0.868 0.945
MLX
M04083_2.00 		Homo sapiens
NDBCACRTGBV
BVCAYGTGVHN		 SELEX
Yin et al.(2017)
MLX_FL_Methyl-HT-SELEX 		0.868 0.945
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG005947.1 bHLH 113 171

Links

Other bHLH family TFs
Other Alligator sinensis TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Usf2 Mus musculus ENSMUSG00000058239 D
USF2 Homo sapiens ENSG00000105698 D
ENSSTOG00000022219 Ictidomys tridecemlineatus ENSSTOG00000022219 I
ENSONIG00000016360 Oreochromis niloticus ENSONIG00000016360 I
USF2 Oryzias latipes ENSORLG00000015114 I
usf1 Oryzias latipes ENSORLG00000015402 I
ENSPANG00000011040 Papio anubis ENSPANG00000011040 I
USF2 Procavia capensis ENSPCAG00000013941 I
ENSPFOG00000005160 Poecilia formosa ENSPFOG00000005160 I
ENSPFOG00000017027 Poecilia formosa ENSPFOG00000017027 I
ENSPPYG00000009855 Pongo abelii ENSPPYG00000009855 I
ENSPSIG00000008600 Pelodiscus sinensis ENSPSIG00000008600 I
USF2 Pan troglodytes ENSPTRG00000010836 I
USF2 Pteropus vampyrus ENSPVAG00000004161 I
Usf2 Rattus norvegicus ENSRNOG00000053725 I
USF2 Sus scrofa ENSSSCG00000002885 I
USF2 Oryctolagus cuniculus ENSOCUG00000026259 I
usf1 Tetraodon nigroviridis ENSTNIG00000014361 I
USF2 Takifugu rubripes ENSTRUG00000005182 I
usf1 Takifugu rubripes ENSTRUG00000005343 I
ENSXMAG00000005137 Xiphophorus maculatus ENSXMAG00000005137 I
ENSXMAG00000006484 Xiphophorus maculatus ENSXMAG00000006484 I
Alligator_sinensis_CCG004656.1 Alligator sinensis Alligator_sinensis_CCG004656.1 I
Cmyd_10000422 Chelonia mydas Cmyd_10000422 I
Myotis_brandtii_USF2_10034396 Myotis brandtii Myotis_brandtii_USF2_10034396 I
Myotis_brandtii_Usf2_10035177 Myotis brandtii Myotis_brandtii_Usf2_10035177 I
Ogr06118 Ophisaurus gracilis Ogr06118 I
Pvit_11612 Pogona vitticeps Pvit_11612 I
usf2.S Xenopus laevis XB-GENE-6253011 I
usf2.L Xenopus laevis XB-GENE-991248 I
ENSGMOG00000009783 Gadus morhua ENSGMOG00000009783 I
ENSAMEG00000000235 Ailuropoda melanoleuca ENSAMEG00000000235 I
ENSAMXG00000009564 Astyanax mexicanus ENSAMXG00000009564 I
USF2 Bos taurus ENSBTAG00000017035 I
USF2 Canis familiaris ENSCAFG00000007054 I
USF2 Callithrix jacchus ENSCJAG00000010451 I
USF2 Cavia porcellus ENSCPOG00000012147 I
ENSCSAG00000004521 Chlorocebus sabaeus ENSCSAG00000004521 I
usf2 Danio rerio ENSDARG00000020228 I
USF2 Dasypus novemcinctus ENSDNOG00000003072 I
USF2 Equus caballus ENSECAG00000008583 I
USF2 Felis catus ENSFCAG00000008894 I
usf1 Gasterosteus aculeatus ENSGACG00000005115 I
USF2 Gasterosteus aculeatus ENSGACG00000012475 I
USF2 Otolemur garnettii ENSOGAG00000001476 I
ENSGMOG00000013274 Gadus morhua ENSGMOG00000013274 I
ENSLACG00000001157 Latimeria chalumnae ENSLACG00000001157 I
ENSLACG00000003269 Latimeria chalumnae ENSLACG00000003269 I
USF2 Loxodonta africana ENSLAFG00000029360 I
ENSLOCG00000005321 Lepisosteus oculatus ENSLOCG00000005321 I
USF2 Microcebus murinus ENSMICG00000001519 I
ENSMLUG00000028063 Myotis lucifugus ENSMLUG00000028063 I
USF2 Macaca mulatta ENSMMUG00000011291 I
USF2 Monodelphis domestica ENSMODG00000013843 I
ENSMPUG00000007099 Mustela putorius furo ENSMPUG00000007099 I
ENSNLEG00000011114 Nomascus leucogenys ENSNLEG00000011114 I
ENSOARG00000004745 Ovis aries ENSOARG00000004745 I
USF2 Anolis carolinensis ENSACAG00000010293 I