Alligator_sinensis_CCG004656.1 (Alligator sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Alligator_sinensis_CCG004656.1 T046635_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
USF2
M04076_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF2_eDBD_HT-SELEX 		0.914 1.000
USF2
M08050_2.00 		Homo sapiens
NNVYCACGTGACHNNN
NNNDGTCACGTGRBNN		 ChIP-seq
Mathelier et al.(2014)
MA0526.2 		0.914 1.000
USF2
M07785_2.00 		Homo sapiens
NGTCACGTGRBSVVV
BBBSVYCACGTGACN		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF2_Stanford 		0.914 1.000
USF2
M07786_2.00 		Homo sapiens
NVGTCACGTGRBSVVV
BBBSVYCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF2_Stanford 		0.914 1.000
USF2
M07787_2.00 		Homo sapiens
RGTCACGTGVB
VBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_USF2_Stanford 		0.914 1.000
USF2
M07788_2.00 		Homo sapiens
NGTCACGTGRBSV
BSVYCACGTGACN		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF2_Stanford 		0.914 1.000
USF2
M07789_2.00 		Homo sapiens
RGTCACGTGRBSV
BSVYCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
K562_USF2_Stanford 		0.914 1.000
USF2
M08715_2.00 		Homo sapiens
NVGTCACGTGVBSVNNVNB
VNBNNBSVBCACGTGACBN		 Misc
Kulakovskiy et al.(2013)
USF2_HUMAN.H11MO.0.A 		0.914 1.000
USF2
M09812_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_01 		0.914 1.000
USF2
M09813_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_02 		0.914 1.000
USF2
M09814_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_Q6_01 		0.914 1.000
USF2
M09815_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_Q6 		0.914 1.000
USF2
M04077_2.00 		Homo sapiens
VNCAYGTGACN
NGTCACRTGNB		 SELEX
Yin et al.(2017)
USF2_eDBD_Methyl-HT-SELEX 		0.914 1.000
Usf2
M01752_2.00 		Mus musculus
NNCACGTGAN
NTCACGTGNN		 PBM
Weirauch et al.(2014)
pTH5265 		0.871 0.981
Usf2
M08777_2.00 		Mus musculus
NVGTCACGTGVBSVNNVNB
VNBNNBSVBCACGTGACBN		 Misc
Kulakovskiy et al.(2013)
USF2_MOUSE.H11MO.0.A 		0.871 0.981
Usf2
M09479_2.00 		Mus musculus
NNCAYGTGVY
RBCACRTGNN		 Misc
Heinz et al.(2010)
C2C12-Usf2_GSE36030 		0.871 0.981
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG004656.1 bHLH 199 254

Links

Other bHLH family TFs
Other Alligator sinensis TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000000235 Ailuropoda melanoleuca ENSAMEG00000000235 I 0.914
USF2 Bos taurus ENSBTAG00000017035 I 0.914
USF2 Canis familiaris ENSCAFG00000007054 I 0.914
USF2 Cavia porcellus ENSCPOG00000012147 I 0.914
ENSCSAG00000004521 Chlorocebus sabaeus ENSCSAG00000004521 I 0.914
USF2 Dasypus novemcinctus ENSDNOG00000003072 I 0.914
USF2 Equus caballus ENSECAG00000008583 I 0.914
USF2 Felis catus ENSFCAG00000008894 I 0.914
USF2 Homo sapiens ENSG00000105698 D 0.914
USF2 Loxodonta africana ENSLAFG00000029360 I 0.914
USF2 Microcebus murinus ENSMICG00000001519 I 0.914
USF2 Macaca mulatta ENSMMUG00000011291 I 0.914
ENSMPUG00000007099 Mustela putorius furo ENSMPUG00000007099 I 0.914
ENSNLEG00000011114 Nomascus leucogenys ENSNLEG00000011114 I 0.914
ENSOARG00000004745 Ovis aries ENSOARG00000004745 I 0.914
USF2 Oryctolagus cuniculus ENSOCUG00000026259 I 0.914
USF2 Otolemur garnettii ENSOGAG00000001476 I 0.914
ENSPANG00000011040 Papio anubis ENSPANG00000011040 I 0.914
USF2 Procavia capensis ENSPCAG00000013941 I 0.914
ENSPPYG00000009855 Pongo abelii ENSPPYG00000009855 I 0.914
USF2 Pan troglodytes ENSPTRG00000010836 I 0.914
USF2 Pteropus vampyrus ENSPVAG00000004161 I 0.914
USF2 Sus scrofa ENSSSCG00000002885 I 0.914
ENSSTOG00000022219 Ictidomys tridecemlineatus ENSSTOG00000022219 I 0.914
ENSP00000222305-D1 Bos grunniens ENSP00000222305-D1 I 0.914
USF2 Callithrix jacchus ENSCJAG00000010451 I 0.903
USF2 Anolis carolinensis ENSACAG00000010293 I 0.889
ENSAMXG00000009564 Astyanax mexicanus ENSAMXG00000009564 I 0.889
usf2 Danio rerio ENSDARG00000020228 I 0.889
USF2 Gasterosteus aculeatus ENSGACG00000012475 I 0.889
ENSGMOG00000013274 Gadus morhua ENSGMOG00000013274 I 0.889
ENSLACG00000003269 Latimeria chalumnae ENSLACG00000003269 I 0.889
ENSLOCG00000005321 Lepisosteus oculatus ENSLOCG00000005321 I 0.889
ENSMLUG00000028063 Myotis lucifugus ENSMLUG00000028063 I 0.889
USF2 Monodelphis domestica ENSMODG00000013843 I 0.889
USF2 Oryzias latipes ENSORLG00000015114 I 0.889
ENSPSIG00000008600 Pelodiscus sinensis ENSPSIG00000008600 I 0.889
USF2 Takifugu rubripes ENSTRUG00000005182 I 0.889
Cmyd_10000422 Chelonia mydas Cmyd_10000422 I 0.889
Myotis_brandtii_Usf2_10035177 Myotis brandtii Myotis_brandtii_Usf2_10035177 I 0.889
Ogr06118 Ophisaurus gracilis Ogr06118 I 0.889
Pvit_11612 Pogona vitticeps Pvit_11612 I 0.889
usf2.S Xenopus laevis XB-GENE-6253011 I 0.886
usf1 Gasterosteus aculeatus ENSGACG00000005115 I 0.876
usf1 Oryzias latipes ENSORLG00000015402 I 0.876
usf1 Tetraodon nigroviridis ENSTNIG00000014361 I 0.876
usf1 Takifugu rubripes ENSTRUG00000005343 I 0.876
Usf2 Mus musculus ENSMUSG00000058239 D 0.871
Usf2 Rattus norvegicus ENSRNOG00000053725 I 0.871
usf2.L Xenopus laevis XB-GENE-991248 I 0.861
ENSLACG00000001157 Latimeria chalumnae ENSLACG00000001157 I 0.858
Myotis_brandtii_USF2_10034396 Myotis brandtii Myotis_brandtii_USF2_10034396 I 0.847
ENSGMOG00000009783 Gadus morhua ENSGMOG00000009783 I 0.846
ENSONIG00000016360 Oreochromis niloticus ENSONIG00000016360 I 0.846
ENSPFOG00000005160 Poecilia formosa ENSPFOG00000005160 I 0.846
ENSPFOG00000017027 Poecilia formosa ENSPFOG00000017027 I 0.846
ENSXMAG00000005137 Xiphophorus maculatus ENSXMAG00000005137 I 0.846
ENSXMAG00000006484 Xiphophorus maculatus ENSXMAG00000006484 I 0.846