Gfo_R013617 (Geospiza fortis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gfo_R013617 T047353_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arntl
M01751_2.00 		Mus musculus
NCACGTGAYN
NRTCACGTGN		 PBM
Weirauch et al.(2014)
pTH5064 		0.914 1.000
ARNTL
M02787_2.00 		Homo sapiens
GTCACGTGAC
GTCACGTGAC		 SELEX
Jolma et al.(2013)
ARNTL_1 		0.914 1.000
ARNTL
M04124_2.00 		Homo sapiens
RDCACGTGHN
NDCACGTGHY		 SELEX
Yin et al.(2017)
ARNTL_eDBD_HT-SELEX 		0.914 1.000
ARNTL
M08725_2.00 		Homo sapiens
NVDCACGTGBN
NVCACGTGHBN		 Misc
Kulakovskiy et al.(2013)
BMAL1_HUMAN.H11MO.0.A 		0.914 1.000
Arntl
M08776_2.00 		Mus musculus
VCACGTGMN
NKCACGTGB		 Misc
Kulakovskiy et al.(2013)
BMAL1_MOUSE.H11MO.0.A 		0.914 1.000
Arntl
M09478_2.00 		Mus musculus
CACGTGNN
NNCACGTG		 Misc
Heinz et al.(2010)
Liver-Bmal1_GSE39860 		0.914 1.000
Arntl
M09889_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BMAL1_01 		0.914 1.000
ARNTL
M09841_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BMAL1_Q6 		0.914 1.000
ARNTL
M04125_2.00 		Homo sapiens
NDCACRTGHY
RDCAYGTGHN		 SELEX
Yin et al.(2017)
ARNTL_eDBD_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R013617 bHLH 60 113

Links

Other bHLH family TFs
Other Geospiza fortis TFs

88 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRHL2 Homo sapiens ENSG00000083307 D
GRHL1 Homo sapiens ENSG00000134317 D
Grhl2 Mus musculus ENSMUSG00000022286 D
GRHL1 Anolis carolinensis ENSACAG00000000132 I
ENSAMEG00000000278 Ailuropoda melanoleuca ENSAMEG00000000278 I
ENSAMEG00000011320 Ailuropoda melanoleuca ENSAMEG00000011320 I
ENSAPLG00000002882 Anas platyrhynchos ENSAPLG00000002882 I
ENSAPLG00000008667 Anas platyrhynchos ENSAPLG00000008667 I
GRHL2 Bos taurus ENSBTAG00000004518 I
GRHL1 Bos taurus ENSBTAG00000007485 I
GRHL2 Canis familiaris ENSCAFG00000000587 I
GRHL1 Canis familiaris ENSCAFG00000003394 I
GRHL1 Callithrix jacchus ENSCJAG00000006431 I
GRHL2 Callithrix jacchus ENSCJAG00000015886 I
GRHL2 Cavia porcellus ENSCPOG00000005630 I
GRHL1 Cavia porcellus ENSCPOG00000010783 I
ENSCSAG00000007158 Chlorocebus sabaeus ENSCSAG00000007158 I
ENSCSAG00000011989 Chlorocebus sabaeus ENSCSAG00000011989 I
grhl1 Danio rerio ENSDARG00000061391 I
grhl2b Danio rerio ENSDARG00000061974 I
GRHL1 Dasypus novemcinctus ENSDNOG00000014493 I
GRHL2 Dasypus novemcinctus ENSDNOG00000048641 I
GRHL2 Equus caballus ENSECAG00000013681 I
GRHL1 Equus caballus ENSECAG00000015969 I
ENSFALG00000005879 Ficedula albicollis ENSFALG00000005879 I
ENSFALG00000006639 Ficedula albicollis ENSFALG00000006639 I
GRHL2 Felis catus ENSFCAG00000004963 I
GRHL1 Felis catus ENSFCAG00000007856 I
grhl1 Gasterosteus aculeatus ENSGACG00000008845 I
ENSGALG00000014208 Gallus gallus ENSGALG00000014208 I
ENSGALG00000016439 Gallus gallus ENSGALG00000016439 I
GRHL1 Gorilla gorilla ENSGGOG00000002692 I
GRHL2 Gorilla gorilla ENSGGOG00000004401 I
ENSGMOG00000003256 Gadus morhua ENSGMOG00000003256 I
ENSLACG00000006172 Latimeria chalumnae ENSLACG00000006172 I
GRHL1 Loxodonta africana ENSLAFG00000009330 I
GRHL2 Loxodonta africana ENSLAFG00000010356 I
ENSLOCG00000016835 Lepisosteus oculatus ENSLOCG00000016835 I
GRHL2 Meleagris gallopavo ENSMGAG00000012259 I
GRHL1 Meleagris gallopavo ENSMGAG00000014007 I
GRHL2 Microcebus murinus ENSMICG00000014771 I
GRHL1 Myotis lucifugus ENSMLUG00000002290 I
GRHL2 Myotis lucifugus ENSMLUG00000010961 I
GRHL1 Macaca mulatta ENSMMUG00000001535 I
GRHL2 Macaca mulatta ENSMMUG00000020995 I
GRHL2 Monodelphis domestica ENSMODG00000006048 I
GRHL1 Monodelphis domestica ENSMODG00000014753 I
ENSMPUG00000013263 Mustela putorius furo ENSMPUG00000013263 I
ENSMPUG00000015153 Mustela putorius furo ENSMPUG00000015153 I
Grhl1 Mus musculus ENSMUSG00000020656 I
ENSNLEG00000003271 Nomascus leucogenys ENSNLEG00000003271 I
ENSNLEG00000013634 Nomascus leucogenys ENSNLEG00000013634 I
GRHL2 Ornithorhynchus anatinus ENSOANG00000004305 I
GRHL1 Ornithorhynchus anatinus ENSOANG00000007788 I
ENSOARG00000015298 Ovis aries ENSOARG00000015298 I
ENSOARG00000018325 Ovis aries ENSOARG00000018325 I
GRHL2 Oryctolagus cuniculus ENSOCUG00000004750 I
GRHL1 Oryctolagus cuniculus ENSOCUG00000017717 I
GRHL2 Otolemur garnettii ENSOGAG00000004751 I
GRHL1 Otolemur garnettii ENSOGAG00000014342 I
ENSONIG00000002710 Oreochromis niloticus ENSONIG00000002710 I
ENSONIG00000003707 Oreochromis niloticus ENSONIG00000003707 I
grhl1 Oryzias latipes ENSORLG00000015232 I
ENSPANG00000017807 Papio anubis ENSPANG00000017807 I
ENSPANG00000020814 Papio anubis ENSPANG00000020814 I
ENSPFOG00000004774 Poecilia formosa ENSPFOG00000004774 I
ENSPFOG00000006095 Poecilia formosa ENSPFOG00000006095 I
ENSPMAG00000005869 Petromyzon marinus ENSPMAG00000005869 I
ENSPMAG00000005876 Petromyzon marinus ENSPMAG00000005876 I
ENSPPYG00000012661 Pongo abelii ENSPPYG00000012661 I
ENSPPYG00000018794 Pongo abelii ENSPPYG00000018794 I
ENSPSIG00000003669 Pelodiscus sinensis ENSPSIG00000003669 I
ENSPSIG00000010930 Pelodiscus sinensis ENSPSIG00000010930 I
GRHL1 Pan troglodytes ENSPTRG00000011643 I
GRHL2 Pan troglodytes ENSPTRG00000020479 I
GRHL1 Pteropus vampyrus ENSPVAG00000002002 I
Grhl2 Rattus norvegicus ENSRNOG00000007000 I
Grhl1 Rattus norvegicus ENSRNOG00000054989 I
ENSSHAG00000002291 Sarcophilus harrisii ENSSHAG00000002291 I
ENSSHAG00000015849 Sarcophilus harrisii ENSSHAG00000015849 I
GRHL2 Sus scrofa ENSSSCG00000006060 I
ENSSTOG00000001498 Ictidomys tridecemlineatus ENSSTOG00000001498 I
ENSSTOG00000019842 Ictidomys tridecemlineatus ENSSTOG00000019842 I
ENSTGUG00000012086 Taeniopygia guttata ENSTGUG00000012086 I
GRHL1 Taeniopygia guttata ENSTGUG00000013038 I
grhl1 Tetraodon nigroviridis ENSTNIG00000017317 I
grhl2b Takifugu rubripes ENSTRUG00000002119 I
grhl1 Takifugu rubripes ENSTRUG00000013628 I
ENSTSYG00000004124 Tarsius syrichta ENSTSYG00000004124 I
GRHL2 Tursiops truncatus ENSTTRG00000005794 I
GRHL1 Vicugna pacos ENSVPAG00000010842 I
ENSXMAG00000013267 Xiphophorus maculatus ENSXMAG00000013267 I
Aan_R003923 Calypte anna Aan_R003923 I
Aan_R015393 Calypte anna Aan_R015393 I
Afo_R002230 Aptenodytes forsteri Afo_R002230 I
Afo_R015753 Aptenodytes forsteri Afo_R015753 I
Alligator_sinensis_CCG017490.1 Alligator sinensis Alligator_sinensis_CCG017490.1 I
Brh_R003016 Buceros rhinoceros Brh_R003016 I
Brh_R013325 Buceros rhinoceros Brh_R013325 I
ENSP00000251808-D1 Bos grunniens ENSP00000251808-D1 I
ENSP00000379261 Macaca fascicularis ENSP00000379261 I
ENSP00000384209-D1 Bos grunniens ENSP00000384209-D1 I
Gfo_R006019 Geospiza fortis Gfo_R006019 I
Gfo_R015266 Geospiza fortis Gfo_R015266 I
Myotis_brandtii_GRHL1_10020834 Myotis brandtii Myotis_brandtii_GRHL1_10020834 I
Myotis_brandtii_GRHL2_10032153 Myotis brandtii Myotis_brandtii_GRHL2_10032153 I
Ogr04284 Ophisaurus gracilis Ogr04284 I
Pvit_03833 Pogona vitticeps Pvit_03833 I
Pvit_14440 Pogona vitticeps Pvit_14440 I
Tal_R012680 Tyto alba Tal_R012680 I
grhl2 Xenopus tropicalis XB-GENE-485995 I
grhl1.L Xenopus laevis XB-GENE-486580 I
XP_002938935 Xenopus tropicalis XP_002938935 I
XP_002938936 Xenopus tropicalis XP_002938936 I