Cagra.3706s0004 (Capsella grandiflora)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cagra.3706s0004 T049297_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS08G0506700
M01755_2.00 		Oryza sativa
NCCACTTGN
NCAAGTGGN		 PBM
Weirauch et al.(2014)
pTH8547 		0.866 0.796
BHLH80
M06722_2.00 		Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH80_col_a 		0.845 0.735
BHLH80
M06723_2.00 		Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH		 Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a 		0.845 0.735
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3706s0004.1.p bHLH 242 290

Links

Other bHLH family TFs
Other Capsella grandiflora TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0001_3341 Arabidopsis lyrata Al_scaffold_0001_3341 N
Al_scaffold_0004_1193 Arabidopsis lyrata Al_scaffold_0004_1193 N
AMTR_s00002p00211460 Amborella trichopoda AMTR_s00002p00211460 N
AT1G32700 Arabidopsis thaliana AT1G32700 N
AT2G27930 Arabidopsis thaliana AT2G27930 N
BGIOSGA005806 Oryza indica BGIOSGA005806 N
BGIOSGA014451 Oryza indica BGIOSGA014451 N
BGIOSGA031347 Oryza indica BGIOSGA031347 N
Bo4g164920 Brassica oleracea Bo4g164920 N
Bo5g049240 Brassica oleracea Bo5g049240 N
Bo8g028900 Brassica oleracea Bo8g028900 N
Bra023280 Brassica rapa Bra023280 N
Bra035494 Brassica rapa Bra035494 N
BRADI3G34160 Brachypodium distachyon BRADI3G34160 N
BRADI3G52170 Brachypodium distachyon BRADI3G52170 N
F775_28196 Aegilops tauschii F775_28196 N
F775_29161 Aegilops tauschii F775_29161 N
fgenesh2_kg.7__2515__AT4G17900.1 Arabidopsis lyrata fgenesh2_kg.7__2515__AT4G17900.1 N
GLYMA01G02180 Glycine max GLYMA01G02180 N
GLYMA01G11390 Glycine max GLYMA01G11390 N
GLYMA01G44430 Glycine max GLYMA01G44430 N
GLYMA03G34530 Glycine max GLYMA03G34530 N
GLYMA08G36641 Glycine max GLYMA08G36641 N
GLYMA09G33770 Glycine max GLYMA09G33770 N
GLYMA10G07240 Glycine max GLYMA10G07240 N
GLYMA11G11640 Glycine max GLYMA11G11640 N
GLYMA12G01890 Glycine max GLYMA12G01890 N
GLYMA12G08810 Glycine max GLYMA12G08810 N
GLYMA13G21140 Glycine max GLYMA13G21140 N
GLYMA19G37220 Glycine max GLYMA19G37220 N
GRMZM2G004548 Zea mays GRMZM2G004548 N
GRMZM2G086403 Zea mays GRMZM2G086403 N
GRMZM2G093270 Zea mays GRMZM2G093270 N
GRMZM2G094168 Zea mays GRMZM2G094168 N
GRMZM2G131280 Zea mays GRMZM2G131280 N
GSMUA_Achr11G17810_001 Musa acuminata GSMUA_Achr11G17810_001 N
GSMUA_Achr2G18160_001 Musa acuminata GSMUA_Achr2G18160_001 N
GSMUA_Achr4G19110_001 Musa acuminata GSMUA_Achr4G19110_001 N
GSMUA_Achr4G27280_001 Musa acuminata GSMUA_Achr4G27280_001 N
GSMUA_Achr5G03420_001 Musa acuminata GSMUA_Achr5G03420_001 N
GSMUA_Achr5G13970_001 Musa acuminata GSMUA_Achr5G13970_001 N
GSMUA_Achr5G18120_001 Musa acuminata GSMUA_Achr5G18120_001 N
GSMUA_Achr7G04460_001 Musa acuminata GSMUA_Achr7G04460_001 N
GSMUA_Achr8G14740_001 Musa acuminata GSMUA_Achr8G14740_001 N
GSMUA_AchrUn_randomG07560_001 Musa acuminata GSMUA_AchrUn_randomG07560_001 N
LPERR02G23300 Leersia perrieri LPERR02G23300 N
LPERR04G19240 Leersia perrieri LPERR04G19240 N
LPERR10G15280 Leersia perrieri LPERR10G15280 N
MLOC_63157 Hordeum vulgare MLOC_63157 N
MLOC_69202 Hordeum vulgare MLOC_69202 N
MTR_1g062160 Medicago truncatula MTR_1g062160 N
MTR_4g078170 Medicago truncatula MTR_4g078170 N
MTR_5g007230 Medicago truncatula MTR_5g007230 N
MTR_5g030130 Medicago truncatula MTR_5g030130 N
MTR_7g102790 Medicago truncatula MTR_7g102790 N
MTR_8g066820 Medicago truncatula MTR_8g066820 N
OB02G35810 Oryza brachyantha OB02G35810 N
OB04G30420 Oryza brachyantha OB04G30420 N
OB10G26540 Oryza brachyantha OB10G26540 N
OBART02G28660 Oryza barthii OBART02G28660 N
OBART04G23520 Oryza barthii OBART04G23520 N
OBART10G19400 Oryza barthii OBART10G19400 N
OGLUM02G29250 Oryza glumaepatula OGLUM02G29250 N
OGLUM04G23440 Oryza glumaepatula OGLUM04G23440 N
OGLUM10G19490 Oryza glumaepatula OGLUM10G19490 N
OLONG_011823 Oryza longistaminata OLONG_011823 N
OLONG_023395 Oryza longistaminata OLONG_023395 N
ONIVA02G31400 Oryza nivara ONIVA02G31400 N
ONIVA04G22750 Oryza nivara ONIVA04G22750 N
ONIVA10G22010 Oryza nivara ONIVA10G22010 N
OPUNC02G26310 Oryza punctata OPUNC02G26310 N
OPUNC04G21040 Oryza punctata OPUNC04G21040 N
OPUNC10G17840 Oryza punctata OPUNC10G17840 N
ORGLA02G0246600 Oryza glaberrima ORGLA02G0246600 N
ORGLA04G0200500 Oryza glaberrima ORGLA04G0200500 N
ORGLA10G0145900 Oryza glaberrima ORGLA10G0145900 N
ORUFI02G30220 Oryza rufipogon ORUFI02G30220 N
ORUFI04G25190 Oryza rufipogon ORUFI04G25190 N
ORUFI10G20640 Oryza rufipogon ORUFI10G20640 N
OS02G0692700 Oryza sativa OS02G0692700 N
OS04G0591100 Oryza sativa OS04G0591100 N
OS10G0574700 Oryza sativa OS10G0574700 N
PGSC0003DMG400008598 Solanum tuberosum PGSC0003DMG400008598 N
POPTR_0001s02390 Populus trichocarpa POPTR_0001s02390 N
POPTR_0003s09160 Populus trichocarpa POPTR_0003s09160 N
POPTR_0006s12100 Populus trichocarpa POPTR_0006s12100 N
POPTR_0009s00830 Populus trichocarpa POPTR_0009s00830 N
POPTR_0019s07790 Populus trichocarpa POPTR_0019s07790 N
PRUPE_ppa011458mg Prunus persica PRUPE_ppa011458mg N
PRUPE_ppa011630mg Prunus persica PRUPE_ppa011630mg N
Sb01g028260 Sorghum bicolor Sb01g028260 N
Sb06g027000 Sorghum bicolor Sb06g027000 N
Sb08g005380 Sorghum bicolor Sb08g005380 N
Si010911m.g Setaria italica Si010911m.g N
Si017318m.g Setaria italica Si017318m.g N
Si035718m.g Setaria italica Si035718m.g N
Solyc10g085800.1 Solanum lycopersicum Solyc10g085800.1 N
TCM_015701 Theobroma cacao TCM_015701 N
TCM_022356 Theobroma cacao TCM_022356 N
TCM_025548 Theobroma cacao TCM_025548 N
Traes_1AL_791D3B325 Triticum aestivum Traes_1AL_791D3B325 N
Traes_2AL_74EFA5757 Triticum aestivum Traes_2AL_74EFA5757 N
Traes_2BL_69847FCA6 Triticum aestivum Traes_2BL_69847FCA6 N
Traes_6DL_CF3557CFC Triticum aestivum Traes_6DL_CF3557CFC N
TRIUR3_25489 Triticum urartu TRIUR3_25489 N
TRIUR3_30366 Triticum urartu TRIUR3_30366 N
VIT_02s0012g01400 Vitis vinifera VIT_02s0012g01400 N
VIT_08s0007g04560 Vitis vinifera VIT_08s0007g04560 N
VIT_16s0039g01560 Vitis vinifera VIT_16s0039g01560 N
Ca_11505 Cicer arietinum Ca_11505 N
Ca_11837 Cicer arietinum Ca_11837 N
Ca_12361 Cicer arietinum Ca_12361 N
Cla008966 Citrullus lanatus Cla008966 N
Cla010408 Citrullus lanatus Cla010408 N
Cla016461 Citrullus lanatus Cla016461 N
Pm001175 Prunus mume Pm001175 N
Pm012470 Prunus mume Pm012470 N
Pm026291 Prunus mume Pm026291 N
30054.m000824 Ricinus communis 30054.m000824 N
30073.m002298 Ricinus communis 30073.m002298 N
30078.m002228 Ricinus communis 30078.m002228 N
cassava13685.valid.m1 Manihot esculenta cassava13685.valid.m1 N
cassava15058.m1 Manihot esculenta cassava15058.m1 N
cassava2216.valid.m1 Manihot esculenta cassava2216.valid.m1 N
cassava22380.valid.m1 Manihot esculenta cassava22380.valid.m1 N
cassava37607.valid.m1 Manihot esculenta cassava37607.valid.m1 N
cassava9017.m1 Manihot esculenta cassava9017.m1 N
Cucsa.313040 Cucumis sativus Cucsa.313040 N
Cucsa.318510 Cucumis sativus Cucsa.318510 N
Cucsa.321900 Cucumis sativus Cucsa.321900 N
e_gw1.1.253.1 Physcomitrella patens e_gw1.1.253.1 N
estExt_gwp_gw1.C_1330066 Physcomitrella patens estExt_gwp_gw1.C_1330066 N
fgenesh1_pg.scaffold_102000043 Physcomitrella patens fgenesh1_pg.scaffold_102000043 N
mgf006916m Mimulus guttatus mgf006916m N
mgf013167m Mimulus guttatus mgf013167m N
Aquca_005_00468 Aquilegia coerulea Aquca_005_00468 N
Aquca_009_01064 Aquilegia coerulea Aquca_009_01064 N
Aquca_019_00150 Aquilegia coerulea Aquca_019_00150 N
Bostr.27991s0138 Boechera stricta Bostr.27991s0138 N
Bostr.30275s0258 Boechera stricta Bostr.30275s0258 N
Bostr.3359s0088 Boechera stricta Bostr.3359s0088 N
Cagra.15046s0001 Capsella grandiflora Cagra.15046s0001 N
Cagra.3356s0083 Capsella grandiflora Cagra.3356s0083 N
Cagra.4962s0001 Capsella grandiflora Cagra.4962s0001 N
Carubv10005524m.g Capsella rubella Carubv10005524m.g N
Carubv10009979m.g Capsella rubella Carubv10009979m.g N
Carubv10024278m.g Capsella rubella Carubv10024278m.g N
Ciclev10012712m.g Citrus clementina Ciclev10012712m.g N
Ciclev10012756m.g Citrus clementina Ciclev10012756m.g N
Ciclev10032089m.g Citrus clementina Ciclev10032089m.g N
Eucgr.A01594 Eucalyptus grandis Eucgr.A01594 N
Eucgr.D02206 Eucalyptus grandis Eucgr.D02206 N
Eucgr.E00276 Eucalyptus grandis Eucgr.E00276 N
evm.TU.supercontig_30.61 Carica papaya evm.TU.supercontig_30.61 N
evm.TU.supercontig_43.104 Carica papaya evm.TU.supercontig_43.104 N
evm.TU.supercontig_5.128 Carica papaya evm.TU.supercontig_5.128 N
gene00954-v1.0-hybrid Fragaria vesca gene00954-v1.0-hybrid N
gene02186-v1.0-hybrid Fragaria vesca gene02186-v1.0-hybrid N
Gorai.001G117900 Gossypium raimondii Gorai.001G117900 N
Gorai.003G056500 Gossypium raimondii Gorai.003G056500 N
Gorai.003G183000 Gossypium raimondii Gorai.003G183000 N
Gorai.006G159900 Gossypium raimondii Gorai.006G159900 N
Gorai.006G217100 Gossypium raimondii Gorai.006G217100 N
Gorai.008G226100 Gossypium raimondii Gorai.008G226100 N
Gorai.009G411100 Gossypium raimondii Gorai.009G411100 N
Lus10004577.g Linum usitatissimum Lus10004577.g N
Lus10014396.g Linum usitatissimum Lus10014396.g N
Lus10020337.g Linum usitatissimum Lus10020337.g N
Lus10027735.g Linum usitatissimum Lus10027735.g N
Lus10030968.g Linum usitatissimum Lus10030968.g N
Lus10035554.g Linum usitatissimum Lus10035554.g N
Lus10040082.g Linum usitatissimum Lus10040082.g N
MDP0000553473 Malus domestica MDP0000553473 N
MDP0000570901 Malus domestica MDP0000570901 N
orange1.1g026096m.g Citrus sinensis orange1.1g026096m.g N
orange1.1g027730m.g Citrus sinensis orange1.1g027730m.g N
orange1.1g028382m.g Citrus sinensis orange1.1g028382m.g N
Pavir.Eb01352 Panicum virgatum Pavir.Eb01352 N
Pavir.Eb02108 Panicum virgatum Pavir.Eb02108 N
Pavir.Ga00766 Panicum virgatum Pavir.Ga00766 N
Pavir.Gb00818 Panicum virgatum Pavir.Gb00818 N
Pavir.J05501 Panicum virgatum Pavir.J05501 N
Pavir.J13246 Panicum virgatum Pavir.J13246 N
SapurV1A.0151s0140 Salix purpurea SapurV1A.0151s0140 N
SapurV1A.0226s0270 Salix purpurea SapurV1A.0226s0270 N
SapurV1A.0288s0160 Salix purpurea SapurV1A.0288s0160 N
SapurV1A.0360s0060 Salix purpurea SapurV1A.0360s0060 N
SapurV1A.0555s0010 Salix purpurea SapurV1A.0555s0010 N
SapurV1A.1507s0030 Salix purpurea SapurV1A.1507s0030 N
SapurV1A.3839s0010 Salix purpurea SapurV1A.3839s0010 N
SapurV1A.5427s0010 Salix purpurea SapurV1A.5427s0010 N
Thhalv10008750m.g Eutrema salsugineum Thhalv10008750m.g N
Thhalv10017279m.g Eutrema salsugineum Thhalv10017279m.g N
PK01309.1 Cannabis sativa PK01309.1 N
PK20928.1 Cannabis sativa PK20928.1 N
PK29286.1 Cannabis sativa PK29286.1 N
chr1.CM0591.460.nd Lotus japonicus chr1.CM0591.460.nd N
chr3.CM0127.220.nc Lotus japonicus chr3.CM0127.220.nc N
LjSGA_028172.2 Lotus japonicus LjSGA_028172.2 N
PDK_20s1306191g001 Phoenix dactylifera PDK_20s1306191g001 N