Cagra.3706s0004 (Capsella grandiflora)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cagra.3706s0004 T049297_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS08G0506700
M01755_2.00 		Oryza sativa
NCCACTTGN
NCAAGTGGN		 PBM
Weirauch et al.(2014)
pTH8547 		0.866 0.796
BHLH80
M06722_2.00 		Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH80_col_a 		0.845 0.735
BHLH80
M06723_2.00 		Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH		 Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a 		0.845 0.735
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3706s0004.1.p bHLH 242 290

Links

Other bHLH family TFs
Other Capsella grandiflora TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT2G43140 Arabidopsis thaliana AT2G43140 I 0.914
Bo3g036400 Brassica oleracea Bo3g036400 I 0.914
Bo4g019620 Brassica oleracea Bo4g019620 I 0.914
Bra000291 Brassica rapa Bra000291 I 0.914
Bra004748 Brassica rapa Bra004748 I 0.914
fgenesh2_kg.4__2475__AT2G43140.1 Arabidopsis lyrata fgenesh2_kg.4__2475__AT2G43140.1 I 0.914
GLYMA20G39220 Glycine max GLYMA20G39220 I 0.914
PGSC0003DMG400006569 Solanum tuberosum PGSC0003DMG400006569 I 0.914
PRUPE_ppa025178mg Prunus persica PRUPE_ppa025178mg I 0.914
Solyc09g098110.2 Solanum lycopersicum Solyc09g098110.2 I 0.914
TCM_020066 Theobroma cacao TCM_020066 I 0.914
VIT_05s0124g00240 Vitis vinifera VIT_05s0124g00240 I 0.914
Pm007619 Prunus mume Pm007619 I 0.914
mgf005043m Mimulus guttatus mgf005043m I 0.914
Bostr.25993s0461 Boechera stricta Bostr.25993s0461 I 0.914
Carubv10023683m.g Capsella rubella Carubv10023683m.g I 0.914
Gorai.011G144600 Gossypium raimondii Gorai.011G144600 I 0.914
MDP0000273574 Malus domestica MDP0000273574 I 0.914
SapurV1A.0529s0060 Salix purpurea SapurV1A.0529s0060 I 0.914
Thhalv10016998m.g Eutrema salsugineum Thhalv10016998m.g I 0.914
PK07850.1 Cannabis sativa PK07850.1 I 0.914
chr5.LjT42F22.20.nc Lotus japonicus chr5.LjT42F22.20.nc I 0.914
30149.m000231 Ricinus communis 30149.m000231 I 0.911
cassava35513.valid.m1 Manihot esculenta cassava35513.valid.m1 I 0.911
BGIOSGA008576 Oryza indica BGIOSGA008576 I 0.894
GRMZM2G437481 Zea mays GRMZM2G437481 I 0.894
LPERR02G18900 Leersia perrieri LPERR02G18900 I 0.894
OB02G30670 Oryza brachyantha OB02G30670 I 0.894
OBART02G23210 Oryza barthii OBART02G23210 I 0.894
OLONG_009256 Oryza longistaminata OLONG_009256 I 0.894
OMERI02G22740 Oryza meridionalis OMERI02G22740 I 0.894
ONIVA02G26110 Oryza nivara ONIVA02G26110 I 0.894
OPUNC02G21170 Oryza punctata OPUNC02G21170 I 0.894
ORGLA02G0200100 Oryza glaberrima ORGLA02G0200100 I 0.894
ORUFI02G24640 Oryza rufipogon ORUFI02G24640 I 0.894
Sb04g025260 Sorghum bicolor Sb04g025260 I 0.894
Sb06g020810 Sorghum bicolor Sb06g020810 I 0.894
Si010513m.g Setaria italica Si010513m.g I 0.894
Aquca_058_00134 Aquilegia coerulea Aquca_058_00134 I 0.894
Pavir.Ab02229 Panicum virgatum Pavir.Ab02229 I 0.894
Pavir.Ga01365 Panicum virgatum Pavir.Ga01365 I 0.894
Pavir.Gb01377 Panicum virgatum Pavir.Gb01377 I 0.894
Pavir.J08536 Panicum virgatum Pavir.J08536 I 0.894
SapurV1A.0071s0010 Salix purpurea SapurV1A.0071s0010 I 0.893
SapurV1A.0402s0180 Salix purpurea SapurV1A.0402s0180 I 0.893
GSMUA_Achr6G21220_001 Musa acuminata GSMUA_Achr6G21220_001 I 0.883
Pavir.Aa01423 Panicum virgatum Pavir.Aa01423 I 0.883
PDK_20s1484071g001 Phoenix dactylifera PDK_20s1484071g001 I 0.881
PDK_20s1630671g001 Phoenix dactylifera PDK_20s1630671g001 I 0.881
evm.TU.supercontig_85.115 Carica papaya evm.TU.supercontig_85.115 I 0.879
SapurV1A.0111s0030 Salix purpurea SapurV1A.0111s0030 I 0.877
SapurV1A.1898s0040 Salix purpurea SapurV1A.1898s0040 I 0.877
Bo4g194080 Brassica oleracea Bo4g194080 N 0.876
Bra037732 Brassica rapa Bra037732 N 0.876
BGIOSGA028963 Oryza indica BGIOSGA028963 I 0.866
BGIOSGA031008 Oryza indica BGIOSGA031008 I 0.866
BRADI3G39927 Brachypodium distachyon BRADI3G39927 I 0.866
F775_24151 Aegilops tauschii F775_24151 I 0.866
GLYMA10G12150 Glycine max GLYMA10G12150 I 0.866
GSMUA_Achr5G22310_001 Musa acuminata GSMUA_Achr5G22310_001 I 0.866
MLOC_67834 Hordeum vulgare MLOC_67834 I 0.866
OB08G26810 Oryza brachyantha OB08G26810 I 0.866
OBART08G19860 Oryza barthii OBART08G19860 I 0.866
OBART09G14660 Oryza barthii OBART09G14660 I 0.866
OGLUM08G21000 Oryza glumaepatula OGLUM08G21000 I 0.866
OGLUM09G15300 Oryza glumaepatula OGLUM09G15300 I 0.866
OLONG_017566 Oryza longistaminata OLONG_017566 I 0.866
OMERI08G16700 Oryza meridionalis OMERI08G16700 I 0.866
OMERI09G11370 Oryza meridionalis OMERI09G11370 I 0.866
ONIVA08G17500 Oryza nivara ONIVA08G17500 I 0.866
ONIVA08G22410 Oryza nivara ONIVA08G22410 I 0.866
OPUNC08G18020 Oryza punctata OPUNC08G18020 I 0.866
OPUNC09G13060 Oryza punctata OPUNC09G13060 I 0.866
ORGLA08G0174800 Oryza glaberrima ORGLA08G0174800 I 0.866
ORGLA09G0112900 Oryza glaberrima ORGLA09G0112900 I 0.866
ORUFI08G22260 Oryza rufipogon ORUFI08G22260 I 0.866
ORUFI09G15820 Oryza rufipogon ORUFI09G15820 I 0.866
OS08G0506700 Oryza sativa OS08G0506700 D 0.866
OS09G0487900 Oryza sativa OS09G0487900 I 0.866
PGSC0003DMG400008153 Solanum tuberosum PGSC0003DMG400008153 I 0.866
POPTR_0006s05640 Populus trichocarpa POPTR_0006s05640 I 0.866
POPTR_0016s05100 Populus trichocarpa POPTR_0016s05100 I 0.866
PRUPE_ppa006295mg Prunus persica PRUPE_ppa006295mg I 0.866
PRUPE_ppa019977mg Prunus persica PRUPE_ppa019977mg I 0.866
Solyc10g079050.1 Solanum lycopersicum Solyc10g079050.1 I 0.866
TCM_024842 Theobroma cacao TCM_024842 I 0.866
Traes_7AS_4FAB72487 Triticum aestivum Traes_7AS_4FAB72487 I 0.866
Traes_7DS_B671A4EAD Triticum aestivum Traes_7DS_B671A4EAD I 0.866
TRIUR3_26625 Triticum urartu TRIUR3_26625 I 0.866
VIT_08s0007g07810 Vitis vinifera VIT_08s0007g07810 I 0.866
Cla017792 Citrullus lanatus Cla017792 I 0.866
Pm000447 Prunus mume Pm000447 I 0.866
Pm025821 Prunus mume Pm025821 I 0.866
29216.m000261 Ricinus communis 29216.m000261 I 0.866
cassava2126.valid.m1 Manihot esculenta cassava2126.valid.m1 I 0.866
cassava30692.valid.m1 Manihot esculenta cassava30692.valid.m1 I 0.866
cassava35967.valid.m1 Manihot esculenta cassava35967.valid.m1 I 0.866
cassava44054.valid.m1 Manihot esculenta cassava44054.valid.m1 I 0.866
Cucsa.242910 Cucumis sativus Cucsa.242910 I 0.866
mgf016734m Mimulus guttatus mgf016734m I 0.866
Aquca_009_00280 Aquilegia coerulea Aquca_009_00280 I 0.866
Ciclev10005233m.g Citrus clementina Ciclev10005233m.g I 0.866
Eucgr.A02417 Eucalyptus grandis Eucgr.A02417 I 0.866
evm.TU.supercontig_84.89 Carica papaya evm.TU.supercontig_84.89 I 0.866
gene00545-v1.0-hybrid Fragaria vesca gene00545-v1.0-hybrid I 0.866
gene20622-v1.0-hybrid Fragaria vesca gene20622-v1.0-hybrid I 0.866
Gorai.002G228900 Gossypium raimondii Gorai.002G228900 I 0.866
Gorai.006G140200 Gossypium raimondii Gorai.006G140200 I 0.866
Lus10021023.g Linum usitatissimum Lus10021023.g I 0.866
Lus10031255.g Linum usitatissimum Lus10031255.g I 0.866
Lus10031826.g Linum usitatissimum Lus10031826.g I 0.866
MDP0000180376 Malus domestica MDP0000180376 I 0.866
orange1.1g018007m.g Citrus sinensis orange1.1g018007m.g I 0.866
SapurV1A.0018s0320 Salix purpurea SapurV1A.0018s0320 I 0.866
SapurV1A.0133s0050 Salix purpurea SapurV1A.0133s0050 I 0.866
PK18038.1 Cannabis sativa PK18038.1 I 0.866
PDK_20s1391471g001 Phoenix dactylifera PDK_20s1391471g001 I 0.866
PGSC0003DMG400025263 Solanum tuberosum PGSC0003DMG400025263 I 0.864
POPTR_0009s06910 Populus trichocarpa POPTR_0009s06910 I 0.864
Si017194m.g Setaria italica Si017194m.g I 0.864
Solyc01g086870.2 Solanum lycopersicum Solyc01g086870.2 I 0.864
VIT_13s0064g01290 Vitis vinifera VIT_13s0064g01290 I 0.864
30152.m002405 Ricinus communis 30152.m002405 I 0.864
cassava29651.valid.m1 Manihot esculenta cassava29651.valid.m1 I 0.864
BHLH128 Arabidopsis thaliana AT1G05805 I 0.856
fgenesh2_kg.1__542__AT1G05805.1 Arabidopsis lyrata fgenesh2_kg.1__542__AT1G05805.1 I 0.856
MTR_1g116790 Medicago truncatula MTR_1g116790 I 0.856
Ca_14007 Cicer arietinum Ca_14007 I 0.856
Cucsa.094340 Cucumis sativus Cucsa.094340 I 0.856
Bostr.25219s0385 Boechera stricta Bostr.25219s0385 I 0.856
Cagra.1671s0210 Capsella grandiflora Cagra.1671s0210 I 0.856
Carubv10009382m.g Capsella rubella Carubv10009382m.g I 0.856
Thhalv10008050m.g Eutrema salsugineum Thhalv10008050m.g I 0.856
GSMUA_Achr7G20490_001 Musa acuminata GSMUA_Achr7G20490_001 I 0.855
Bo5g006980 Brassica oleracea Bo5g006980 I 0.853
Bo5g007030 Brassica oleracea Bo5g007030 I 0.853
Bra015456 Brassica rapa Bra015456 I 0.853
Eucgr.A00213 Eucalyptus grandis Eucgr.A00213 I 0.853
Lus10025518.g Linum usitatissimum Lus10025518.g I 0.853
Lus10026733.g Linum usitatissimum Lus10026733.g I 0.853
GLYMA08G16190 Glycine max GLYMA08G16190 I 0.846
GLYMA12G36750 Glycine max GLYMA12G36750 I 0.846
GLYMA13G27455 Glycine max GLYMA13G27455 I 0.846
MTR_3g027650 Medicago truncatula MTR_3g027650 I 0.846
MTR_3g028520 Medicago truncatula MTR_3g028520 I 0.846
Cla015469 Citrullus lanatus Cla015469 I 0.846
Cucsa.050160 Cucumis sativus Cucsa.050160 I 0.846
BHLH80 Arabidopsis thaliana AT1G35460 D 0.845
BHLH81 Arabidopsis thaliana AT4G09180 I 0.845
Bo6g043840 Brassica oleracea Bo6g043840 I 0.845
Bo8g026850 Brassica oleracea Bo8g026850 I 0.845
Bra028088 Brassica rapa Bra028088 I 0.845
Bra036760 Brassica rapa Bra036760 I 0.845
fgenesh2_kg.6__2924__AT4G09180.1 Arabidopsis lyrata fgenesh2_kg.6__2924__AT4G09180.1 I 0.845
GLYMA08G26110 Glycine max GLYMA08G26110 I 0.845
PGSC0003DMG400031314 Solanum tuberosum PGSC0003DMG400031314 I 0.845
PRUPE_ppa011017mg Prunus persica PRUPE_ppa011017mg I 0.845
scaffold_103992.1 Arabidopsis lyrata scaffold_103992.1 I 0.845
Solyc06g065040.2 Solanum lycopersicum Solyc06g065040.2 I 0.845
TCM_036484 Theobroma cacao TCM_036484 I 0.845
VIT_18s0041g00690 Vitis vinifera VIT_18s0041g00690 I 0.845
Pm004181 Prunus mume Pm004181 I 0.845
cassava13743.valid.m1 Manihot esculenta cassava13743.valid.m1 I 0.845
Cucsa.061590 Cucumis sativus Cucsa.061590 I 0.845
mgf002701m Mimulus guttatus mgf002701m I 0.845
Bostr.1774s0027 Boechera stricta Bostr.1774s0027 I 0.845
Bostr.25463s0393 Boechera stricta Bostr.25463s0393 I 0.845
Cagra.18223s0002 Capsella grandiflora Cagra.18223s0002 I 0.845
Cagra.9781s0002 Capsella grandiflora Cagra.9781s0002 I 0.845
Carubv10001721m.g Capsella rubella Carubv10001721m.g I 0.845
Carubv10010050m.g Capsella rubella Carubv10010050m.g I 0.845
Ciclev10002083m.g Citrus clementina Ciclev10002083m.g I 0.845
gene26880-v1.0-hybrid Fragaria vesca gene26880-v1.0-hybrid I 0.845
Gorai.013G138300 Gossypium raimondii Gorai.013G138300 I 0.845
MDP0000269890 Malus domestica MDP0000269890 I 0.845
orange1.1g023215m.g Citrus sinensis orange1.1g023215m.g I 0.845
SapurV1A.0391s0050 Salix purpurea SapurV1A.0391s0050 I 0.845
SapurV1A.0690s0120 Salix purpurea SapurV1A.0690s0120 I 0.845
SapurV1A.1647s0020 Salix purpurea SapurV1A.1647s0020 I 0.845
Thhalv10028883m.g Eutrema salsugineum Thhalv10028883m.g I 0.845
PK06301.1 Cannabis sativa PK06301.1 I 0.845
TCM_005925 Theobroma cacao TCM_005925 I 0.843
Gorai.004G035800 Gossypium raimondii Gorai.004G035800 I 0.843
chr1.CM0318.250.nd Lotus japonicus chr1.CM0318.250.nd I 0.841