orange1.1g018007m.g (Citrus sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 orange1.1g018007m.g T050556_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS08G0506700
M01755_2.00 		Oryza sativa
NCCACTTGN
NCAAGTGGN		 PBM
Weirauch et al.(2014)
pTH8547 		0.902 0.980
BHLH122
M06724_2.00 		Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN		 Dap-seq
OMalley et al.(2016)
bHLH122_col100_a 		0.879 0.922
BHLH122
M06725_2.00 		Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a 		0.879 0.922
BHLH80
M06722_2.00 		Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH80_col_a 		0.861 0.843
BHLH80
M06723_2.00 		Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH		 Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a 		0.861 0.843
AT2G42280
M06733_2.00 		Arabidopsis thaliana
DNCMACTTGYH
DRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH130_col_a 		0.856 0.980
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g018007m bHLH 285 335
orange1.1g018789m bHLH 273 323

Links

Other bHLH family TFs
Other Citrus sinensis TFs

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA10G12150 Glycine max GLYMA10G12150 I 0.914
GSMUA_Achr5G22310_001 Musa acuminata GSMUA_Achr5G22310_001 I 0.914
PGSC0003DMG400008153 Solanum tuberosum PGSC0003DMG400008153 I 0.914
POPTR_0006s05640 Populus trichocarpa POPTR_0006s05640 I 0.914
POPTR_0016s05100 Populus trichocarpa POPTR_0016s05100 I 0.914
PRUPE_ppa006295mg Prunus persica PRUPE_ppa006295mg I 0.914
PRUPE_ppa019977mg Prunus persica PRUPE_ppa019977mg I 0.914
Solyc10g079050.1 Solanum lycopersicum Solyc10g079050.1 I 0.914
TCM_024842 Theobroma cacao TCM_024842 I 0.914
VIT_08s0007g07810 Vitis vinifera VIT_08s0007g07810 I 0.914
Cla017792 Citrullus lanatus Cla017792 I 0.914
Pm000447 Prunus mume Pm000447 I 0.914
Pm025821 Prunus mume Pm025821 I 0.914
29216.m000261 Ricinus communis 29216.m000261 I 0.914
cassava2126.valid.m1 Manihot esculenta cassava2126.valid.m1 I 0.914
cassava30692.valid.m1 Manihot esculenta cassava30692.valid.m1 I 0.914
cassava35967.valid.m1 Manihot esculenta cassava35967.valid.m1 I 0.914
cassava44054.valid.m1 Manihot esculenta cassava44054.valid.m1 I 0.914
Cucsa.242910 Cucumis sativus Cucsa.242910 I 0.914
mgf016734m Mimulus guttatus mgf016734m I 0.914
Aquca_009_00280 Aquilegia coerulea Aquca_009_00280 I 0.914
Ciclev10005233m.g Citrus clementina Ciclev10005233m.g I 0.914
Eucgr.A02417 Eucalyptus grandis Eucgr.A02417 I 0.914
evm.TU.supercontig_84.89 Carica papaya evm.TU.supercontig_84.89 I 0.914
gene00545-v1.0-hybrid Fragaria vesca gene00545-v1.0-hybrid I 0.914
gene20622-v1.0-hybrid Fragaria vesca gene20622-v1.0-hybrid I 0.914
Gorai.002G228900 Gossypium raimondii Gorai.002G228900 I 0.914
Gorai.006G140200 Gossypium raimondii Gorai.006G140200 I 0.914
Lus10021023.g Linum usitatissimum Lus10021023.g I 0.914
Lus10031255.g Linum usitatissimum Lus10031255.g I 0.914
Lus10031826.g Linum usitatissimum Lus10031826.g I 0.914
MDP0000180376 Malus domestica MDP0000180376 I 0.914
SapurV1A.0018s0320 Salix purpurea SapurV1A.0018s0320 I 0.914
SapurV1A.0133s0050 Salix purpurea SapurV1A.0133s0050 I 0.914
PK18038.1 Cannabis sativa PK18038.1 I 0.914
PDK_20s1391471g001 Phoenix dactylifera PDK_20s1391471g001 I 0.914
PGSC0003DMG400025263 Solanum tuberosum PGSC0003DMG400025263 I 0.912
POPTR_0009s06910 Populus trichocarpa POPTR_0009s06910 I 0.912
Solyc01g086870.2 Solanum lycopersicum Solyc01g086870.2 I 0.912
VIT_13s0064g01290 Vitis vinifera VIT_13s0064g01290 I 0.912
30152.m002405 Ricinus communis 30152.m002405 I 0.912
cassava29651.valid.m1 Manihot esculenta cassava29651.valid.m1 I 0.912
GSMUA_Achr7G20490_001 Musa acuminata GSMUA_Achr7G20490_001 I 0.903
BGIOSGA028963 Oryza indica BGIOSGA028963 I 0.902
BGIOSGA031008 Oryza indica BGIOSGA031008 I 0.902
BRADI3G39927 Brachypodium distachyon BRADI3G39927 I 0.902
F775_24151 Aegilops tauschii F775_24151 I 0.902
MLOC_67834 Hordeum vulgare MLOC_67834 I 0.902
OB08G26810 Oryza brachyantha OB08G26810 I 0.902
OBART08G19860 Oryza barthii OBART08G19860 I 0.902
OBART09G14660 Oryza barthii OBART09G14660 I 0.902
OGLUM08G21000 Oryza glumaepatula OGLUM08G21000 I 0.902
OGLUM09G15300 Oryza glumaepatula OGLUM09G15300 I 0.902
OLONG_017566 Oryza longistaminata OLONG_017566 I 0.902
OMERI08G16700 Oryza meridionalis OMERI08G16700 I 0.902
OMERI09G11370 Oryza meridionalis OMERI09G11370 I 0.902
ONIVA08G17500 Oryza nivara ONIVA08G17500 I 0.902
ONIVA08G22410 Oryza nivara ONIVA08G22410 I 0.902
OPUNC08G18020 Oryza punctata OPUNC08G18020 I 0.902
OPUNC09G13060 Oryza punctata OPUNC09G13060 I 0.902
ORGLA08G0174800 Oryza glaberrima ORGLA08G0174800 I 0.902
ORGLA09G0112900 Oryza glaberrima ORGLA09G0112900 I 0.902
ORUFI08G22260 Oryza rufipogon ORUFI08G22260 I 0.902
ORUFI09G15820 Oryza rufipogon ORUFI09G15820 I 0.902
OS08G0506700 Oryza sativa OS08G0506700 D 0.902
OS09G0487900 Oryza sativa OS09G0487900 I 0.902
Traes_7AS_4FAB72487 Triticum aestivum Traes_7AS_4FAB72487 I 0.902
Traes_7DS_B671A4EAD Triticum aestivum Traes_7DS_B671A4EAD I 0.902
TRIUR3_26625 Triticum urartu TRIUR3_26625 I 0.902
evm.TU.supercontig_85.115 Carica papaya evm.TU.supercontig_85.115 I 0.902
SapurV1A.0111s0030 Salix purpurea SapurV1A.0111s0030 I 0.899
SapurV1A.1898s0040 Salix purpurea SapurV1A.1898s0040 I 0.899
PDK_20s1484071g001 Phoenix dactylifera PDK_20s1484071g001 I 0.899
PDK_20s1630671g001 Phoenix dactylifera PDK_20s1630671g001 I 0.899
TCM_005925 Theobroma cacao TCM_005925 I 0.891
Gorai.004G035800 Gossypium raimondii Gorai.004G035800 I 0.891
BGIOSGA008576 Oryza indica BGIOSGA008576 I 0.887
GRMZM2G437481 Zea mays GRMZM2G437481 I 0.887
LPERR02G18900 Leersia perrieri LPERR02G18900 I 0.887
OB02G30670 Oryza brachyantha OB02G30670 I 0.887
OBART02G23210 Oryza barthii OBART02G23210 I 0.887
OLONG_009256 Oryza longistaminata OLONG_009256 I 0.887
OMERI02G22740 Oryza meridionalis OMERI02G22740 I 0.887
ONIVA02G26110 Oryza nivara ONIVA02G26110 I 0.887
OPUNC02G21170 Oryza punctata OPUNC02G21170 I 0.887
ORGLA02G0200100 Oryza glaberrima ORGLA02G0200100 I 0.887
ORUFI02G24640 Oryza rufipogon ORUFI02G24640 I 0.887
Sb04g025260 Sorghum bicolor Sb04g025260 I 0.887
Sb06g020810 Sorghum bicolor Sb06g020810 I 0.887
Si010513m.g Setaria italica Si010513m.g I 0.887
Pavir.Ab02229 Panicum virgatum Pavir.Ab02229 I 0.887
Pavir.Ga01365 Panicum virgatum Pavir.Ga01365 I 0.887
Pavir.Gb01377 Panicum virgatum Pavir.Gb01377 I 0.887
Pavir.J08536 Panicum virgatum Pavir.J08536 I 0.887
Ciclev10031622m.g Citrus clementina Ciclev10031622m.g I 0.885
gene26967-v1.0-hybrid Fragaria vesca gene26967-v1.0-hybrid I 0.885
orange1.1g016638m.g Citrus sinensis orange1.1g016638m.g I 0.885
GLYMA02G29830 Glycine max GLYMA02G29830 I 0.884
SapurV1A.0027s0090 Salix purpurea SapurV1A.0027s0090 I 0.882
gw1.185.89.1 Physcomitrella patens gw1.185.89.1 I 0.880
BHLH122 Arabidopsis thaliana AT1G51140 D 0.879
Bo4g191390 Brassica oleracea Bo4g191390 I 0.879
Bo6g024810 Brassica oleracea Bo6g024810 I 0.879
Bra016886 Brassica rapa Bra016886 I 0.879
Bra018896 Brassica rapa Bra018896 I 0.879
fgenesh2_kg.1__4183__AT1G51140.1 Arabidopsis lyrata fgenesh2_kg.1__4183__AT1G51140.1 I 0.879
GLYMA11G13960 Glycine max GLYMA11G13960 I 0.879
GLYMA12G05930 Glycine max GLYMA12G05930 I 0.879
GLYMA13G41670 Glycine max GLYMA13G41670 I 0.879
GLYMA15G03740 Glycine max GLYMA15G03740 I 0.879
GSMUA_Achr9G27780_001 Musa acuminata GSMUA_Achr9G27780_001 I 0.879
MTR_2g098310 Medicago truncatula MTR_2g098310 I 0.879
TCM_040564 Theobroma cacao TCM_040564 I 0.879
Ca_02662 Cicer arietinum Ca_02662 I 0.879
Ca_14223 Cicer arietinum Ca_14223 I 0.879
Bostr.26675s0074 Boechera stricta Bostr.26675s0074 I 0.879
Cagra.2093s0006 Capsella grandiflora Cagra.2093s0006 I 0.879
Carubv10009458m.g Capsella rubella Carubv10009458m.g I 0.879
Ciclev10015437m.g Citrus clementina Ciclev10015437m.g I 0.879
Eucgr.B03669 Eucalyptus grandis Eucgr.B03669 I 0.879
Gorai.009G071900 Gossypium raimondii Gorai.009G071900 I 0.879
orange1.1g015337m.g Citrus sinensis orange1.1g015337m.g I 0.879
Thhalv10011463m.g Eutrema salsugineum Thhalv10011463m.g I 0.879
PK20089.1 Cannabis sativa PK20089.1 I 0.879
GSMUA_Achr6G21220_001 Musa acuminata GSMUA_Achr6G21220_001 I 0.875
Pavir.Aa01423 Panicum virgatum Pavir.Aa01423 I 0.875
PRUPE_ppa006134mg Prunus persica PRUPE_ppa006134mg I 0.873
Pm016406 Prunus mume Pm016406 I 0.873
Ca_26916 Cicer arietinum Ca_26916 I 0.870
30149.m000231 Ricinus communis 30149.m000231 I 0.870
cassava35513.valid.m1 Manihot esculenta cassava35513.valid.m1 I 0.870
Cla015469 Citrullus lanatus Cla015469 I 0.869
e_gw1.34.393.1 Physcomitrella patens e_gw1.34.393.1 I 0.869
GRMZM2G085467 Zea mays GRMZM2G085467 I 0.867
GRMZM2G417597 Zea mays GRMZM2G417597 I 0.867
GSMUA_Achr3G11110_001 Musa acuminata GSMUA_Achr3G11110_001 I 0.867
Sb02g028300 Sorghum bicolor Sb02g028300 I 0.867
Si029614m.g Setaria italica Si029614m.g I 0.867
Eucgr.J00796 Eucalyptus grandis Eucgr.J00796 I 0.867
Pavir.Ba01718 Panicum virgatum Pavir.Ba01718 I 0.867
Pavir.J00377 Panicum virgatum Pavir.J00377 I 0.867
Pavir.J14004 Panicum virgatum Pavir.J14004 I 0.867
AT2G43140 Arabidopsis thaliana AT2G43140 I 0.866
Bo3g036400 Brassica oleracea Bo3g036400 I 0.866
Bo4g019620 Brassica oleracea Bo4g019620 I 0.866
Bra000291 Brassica rapa Bra000291 I 0.866
Bra004748 Brassica rapa Bra004748 I 0.866
fgenesh2_kg.4__2475__AT2G43140.1 Arabidopsis lyrata fgenesh2_kg.4__2475__AT2G43140.1 I 0.866
GLYMA20G39220 Glycine max GLYMA20G39220 I 0.866
PGSC0003DMG400006569 Solanum tuberosum PGSC0003DMG400006569 I 0.866
PRUPE_ppa025178mg Prunus persica PRUPE_ppa025178mg I 0.866
Solyc09g098110.2 Solanum lycopersicum Solyc09g098110.2 I 0.866
TCM_020066 Theobroma cacao TCM_020066 I 0.866
VIT_05s0124g00240 Vitis vinifera VIT_05s0124g00240 I 0.866
Pm007619 Prunus mume Pm007619 I 0.866
cassava36544.valid.m1 Manihot esculenta cassava36544.valid.m1 I 0.866
mgf005043m Mimulus guttatus mgf005043m I 0.866
Aquca_058_00134 Aquilegia coerulea Aquca_058_00134 I 0.866
Bostr.25993s0461 Boechera stricta Bostr.25993s0461 I 0.866
Cagra.3706s0004 Capsella grandiflora Cagra.3706s0004 I 0.866
Carubv10023683m.g Capsella rubella Carubv10023683m.g I 0.866
Gorai.011G144600 Gossypium raimondii Gorai.011G144600 I 0.866
MDP0000273574 Malus domestica MDP0000273574 I 0.866
SapurV1A.0529s0060 Salix purpurea SapurV1A.0529s0060 I 0.866
Thhalv10016998m.g Eutrema salsugineum Thhalv10016998m.g I 0.866
PK07850.1 Cannabis sativa PK07850.1 I 0.866
chr5.LjT42F22.20.nc Lotus japonicus chr5.LjT42F22.20.nc I 0.866
BHLH80 Arabidopsis thaliana AT1G35460 D 0.861
BHLH81 Arabidopsis thaliana AT4G09180 I 0.861
Bo6g043840 Brassica oleracea Bo6g043840 I 0.861
Bo8g026850 Brassica oleracea Bo8g026850 I 0.861
Bra028088 Brassica rapa Bra028088 I 0.861
Bra036760 Brassica rapa Bra036760 I 0.861
fgenesh2_kg.6__2924__AT4G09180.1 Arabidopsis lyrata fgenesh2_kg.6__2924__AT4G09180.1 I 0.861
GLYMA08G26110 Glycine max GLYMA08G26110 I 0.861
PGSC0003DMG400031314 Solanum tuberosum PGSC0003DMG400031314 I 0.861
PRUPE_ppa011017mg Prunus persica PRUPE_ppa011017mg I 0.861
scaffold_103992.1 Arabidopsis lyrata scaffold_103992.1 I 0.861
Solyc06g065040.2 Solanum lycopersicum Solyc06g065040.2 I 0.861
TCM_036484 Theobroma cacao TCM_036484 I 0.861
VIT_18s0041g00690 Vitis vinifera VIT_18s0041g00690 I 0.861
Pm004181 Prunus mume Pm004181 I 0.861
cassava13743.valid.m1 Manihot esculenta cassava13743.valid.m1 I 0.861
Cucsa.061590 Cucumis sativus Cucsa.061590 I 0.861
mgf002701m Mimulus guttatus mgf002701m I 0.861
Bostr.1774s0027 Boechera stricta Bostr.1774s0027 I 0.861
Bostr.25463s0393 Boechera stricta Bostr.25463s0393 I 0.861
Cagra.18223s0002 Capsella grandiflora Cagra.18223s0002 I 0.861
Cagra.9781s0002 Capsella grandiflora Cagra.9781s0002 I 0.861
Carubv10001721m.g Capsella rubella Carubv10001721m.g I 0.861
Carubv10010050m.g Capsella rubella Carubv10010050m.g I 0.861
Ciclev10002083m.g Citrus clementina Ciclev10002083m.g I 0.861
gene26880-v1.0-hybrid Fragaria vesca gene26880-v1.0-hybrid I 0.861
Gorai.013G138300 Gossypium raimondii Gorai.013G138300 I 0.861
MDP0000269890 Malus domestica MDP0000269890 I 0.861
orange1.1g023215m.g Citrus sinensis orange1.1g023215m.g I 0.861
SapurV1A.0391s0050 Salix purpurea SapurV1A.0391s0050 I 0.861
SapurV1A.0690s0120 Salix purpurea SapurV1A.0690s0120 I 0.861
SapurV1A.1647s0020 Salix purpurea SapurV1A.1647s0020 I 0.861
Thhalv10028883m.g Eutrema salsugineum Thhalv10028883m.g I 0.861
PK06301.1 Cannabis sativa PK06301.1 I 0.861
evm.TU.contig_45766 Carica papaya evm.TU.contig_45766 I 0.860
PGSC0003DMG400023852 Solanum tuberosum PGSC0003DMG400023852 I 0.858
POPTR_0001s27680 Populus trichocarpa POPTR_0001s27680 I 0.858
Solyc12g100140.1 Solanum lycopersicum Solyc12g100140.1 I 0.858
PDK_20s1302565g001 Phoenix dactylifera PDK_20s1302565g001 I 0.858
GLYMA08G16190 Glycine max GLYMA08G16190 I 0.857
Si017194m.g Setaria italica Si017194m.g I 0.857
Cucsa.050160 Cucumis sativus Cucsa.050160 I 0.857
AT2G42280 Arabidopsis thaliana AT2G42280 D 0.856
POPTR_0003s22290 Populus trichocarpa POPTR_0003s22290 I 0.856
scaffold_403077.1 Arabidopsis lyrata scaffold_403077.1 I 0.856
VIT_06s0004g01740 Vitis vinifera VIT_06s0004g01740 I 0.856
30169.m006403 Ricinus communis 30169.m006403 I 0.856
Cagra.2636s0012 Capsella grandiflora Cagra.2636s0012 I 0.856
Carubv10023498m.g Capsella rubella Carubv10023498m.g I 0.856
MDP0000307685 Malus domestica MDP0000307685 I 0.856
SapurV1A.0009s0400 Salix purpurea SapurV1A.0009s0400 I 0.856
Eucgr.G03396 Eucalyptus grandis Eucgr.G03396 I 0.854
chr1.CM0318.250.nd Lotus japonicus chr1.CM0318.250.nd I 0.852
AMTR_s00070p00149100 Amborella trichopoda AMTR_s00070p00149100 I 0.849
PGSC0003DMG400022058 Solanum tuberosum PGSC0003DMG400022058 I 0.849
Solyc11g056650.1 Solanum lycopersicum Solyc11g056650.1 I 0.849
GLYMA15G42680 Glycine max GLYMA15G42680 I 0.845
mgf018372m Mimulus guttatus mgf018372m N 0.845
SapurV1A.0071s0010 Salix purpurea SapurV1A.0071s0010 I 0.845
SapurV1A.0402s0180 Salix purpurea SapurV1A.0402s0180 I 0.845
LPERR08G16800 Leersia perrieri LPERR08G16800 I 0.844
LPERR09G10800 Leersia perrieri LPERR09G10800 I 0.844
PK14093.1 Cannabis sativa PK14093.1 I 0.844
GLYMA19G32600 Glycine max GLYMA19G32600 I 0.839