scaffold_403077.1 (Arabidopsis lyrata)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 scaffold_403077.1 T044507_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G42280
M06733_2.00 		Arabidopsis thaliana
DNCMACTTGYH
DRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH130_col_a 		0.914 1.000
OS08G0506700
M01755_2.00 		Oryza sativa
NCCACTTGN
NCAAGTGGN		 PBM
Weirauch et al.(2014)
pTH8547 		0.844 0.961
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_403077.1 bHLH 286 336

Links

Other bHLH family TFs
Other Arabidopsis lyrata TFs

172 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT2G42280 Arabidopsis thaliana AT2G42280 D 0.914
POPTR_0003s22290 Populus trichocarpa POPTR_0003s22290 I 0.914
VIT_06s0004g01740 Vitis vinifera VIT_06s0004g01740 I 0.914
30169.m006403 Ricinus communis 30169.m006403 I 0.914
Cagra.2636s0012 Capsella grandiflora Cagra.2636s0012 I 0.914
Carubv10023498m.g Capsella rubella Carubv10023498m.g I 0.914
MDP0000307685 Malus domestica MDP0000307685 I 0.914
SapurV1A.0009s0400 Salix purpurea SapurV1A.0009s0400 I 0.914
LPERR08G16800 Leersia perrieri LPERR08G16800 I 0.902
LPERR09G10800 Leersia perrieri LPERR09G10800 I 0.902
Bostr.25993s0551 Boechera stricta Bostr.25993s0551 I 0.893
BGIOSGA016651 Oryza indica BGIOSGA016651 I 0.887
BRADI3G48070 Brachypodium distachyon BRADI3G48070 I 0.887
LPERR04G13560 Leersia perrieri LPERR04G13560 I 0.887
MLOC_12058 Hordeum vulgare MLOC_12058 I 0.887
OB04G24170 Oryza brachyantha OB04G24170 I 0.887
OBART04G16900 Oryza barthii OBART04G16900 I 0.887
OGLUM04G16920 Oryza glumaepatula OGLUM04G16920 I 0.887
OMERI04G14260 Oryza meridionalis OMERI04G14260 I 0.887
ONIVA04G15000 Oryza nivara ONIVA04G15000 I 0.887
OPUNC04G14700 Oryza punctata OPUNC04G14700 I 0.887
ORGLA04G0140000 Oryza glaberrima ORGLA04G0140000 I 0.887
ORUFI04G18350 Oryza rufipogon ORUFI04G18350 I 0.887
OS04G0489600 Oryza sativa OS04G0489600 I 0.887
Ca_07284 Cicer arietinum Ca_07284 I 0.881
e_gw1.272.41.1 Physcomitrella patens e_gw1.272.41.1 I 0.880
Bo4g015860 Brassica oleracea Bo4g015860 I 0.879
Bra004678 Brassica rapa Bra004678 I 0.879
MTR_1g052470 Medicago truncatula MTR_1g052470 I 0.879
MTR_4g065870 Medicago truncatula MTR_4g065870 I 0.879
Ca_18899 Cicer arietinum Ca_18899 I 0.879
Cla006394 Citrullus lanatus Cla006394 I 0.879
Cucsa.143260 Cucumis sativus Cucsa.143260 I 0.879
mgf016092m Mimulus guttatus mgf016092m I 0.879
MTR_7g092540 Medicago truncatula MTR_7g092540 I 0.875
Bo5g006980 Brassica oleracea Bo5g006980 I 0.870
Bo5g007030 Brassica oleracea Bo5g007030 I 0.870
Bra015456 Brassica rapa Bra015456 I 0.870
Eucgr.A00213 Eucalyptus grandis Eucgr.A00213 I 0.870
Lus10025518.g Linum usitatissimum Lus10025518.g I 0.870
Lus10026733.g Linum usitatissimum Lus10026733.g I 0.870
PDK_20s1546591g001 Phoenix dactylifera PDK_20s1546591g001 I 0.870
BRADI4G33670 Brachypodium distachyon BRADI4G33670 I 0.867
GRMZM2G142932 Zea mays GRMZM2G142932 I 0.867
GRMZM2G153454 Zea mays GRMZM2G153454 I 0.867
MLOC_30102 Hordeum vulgare MLOC_30102 I 0.867
Sb07g027810 Sorghum bicolor Sb07g027810 I 0.867
Si013950m.g Setaria italica Si013950m.g I 0.867
Si030166m.g Setaria italica Si030166m.g I 0.867
Traes_5BL_4317E525B Triticum aestivum Traes_5BL_4317E525B I 0.867
Pavir.Ba00676 Panicum virgatum Pavir.Ba00676 I 0.867
Pavir.Bb03157 Panicum virgatum Pavir.Bb03157 I 0.867
Pavir.Fa00493 Panicum virgatum Pavir.Fa00493 I 0.867
Pavir.J25484 Panicum virgatum Pavir.J25484 I 0.867
BHLH128 Arabidopsis thaliana AT1G05805 I 0.866
F775_26506 Aegilops tauschii F775_26506 I 0.866
fgenesh2_kg.1__542__AT1G05805.1 Arabidopsis lyrata fgenesh2_kg.1__542__AT1G05805.1 I 0.866
MTR_1g116790 Medicago truncatula MTR_1g116790 I 0.866
Traes_6AL_9437F730F Triticum aestivum Traes_6AL_9437F730F I 0.866
Traes_6BL_868408DFC Triticum aestivum Traes_6BL_868408DFC I 0.866
Traes_6DL_62A15AED6 Triticum aestivum Traes_6DL_62A15AED6 I 0.866
TRIUR3_16394 Triticum urartu TRIUR3_16394 I 0.866
Ca_14007 Cicer arietinum Ca_14007 I 0.866
Cucsa.094340 Cucumis sativus Cucsa.094340 I 0.866
Bostr.25219s0385 Boechera stricta Bostr.25219s0385 I 0.866
Cagra.1671s0210 Capsella grandiflora Cagra.1671s0210 I 0.866
Carubv10009382m.g Capsella rubella Carubv10009382m.g I 0.866
Ciclev10020681m.g Citrus clementina Ciclev10020681m.g I 0.866
orange1.1g038558m.g Citrus sinensis orange1.1g038558m.g I 0.866
Thhalv10008050m.g Eutrema salsugineum Thhalv10008050m.g I 0.866
BGIOSGA004992 Oryza indica BGIOSGA004992 I 0.861
BRADI2G57800 Brachypodium distachyon BRADI2G57800 I 0.861
F775_24576 Aegilops tauschii F775_24576 I 0.861
LPERR01G35240 Leersia perrieri LPERR01G35240 I 0.861
MLOC_20318 Hordeum vulgare MLOC_20318 I 0.861
OB01G49420 Oryza brachyantha OB01G49420 I 0.861
OBART01G40680 Oryza barthii OBART01G40680 I 0.861
OGLUM01G44860 Oryza glumaepatula OGLUM01G44860 I 0.861
OLONG_004619 Oryza longistaminata OLONG_004619 I 0.861
OMERI01G37660 Oryza meridionalis OMERI01G37660 I 0.861
ONIVA01G45730 Oryza nivara ONIVA01G45730 I 0.861
OPUNC01G39450 Oryza punctata OPUNC01G39450 I 0.861
ORGLA01G0346300 Oryza glaberrima ORGLA01G0346300 I 0.861
ORUFI01G44010 Oryza rufipogon ORUFI01G44010 I 0.861
OS01G0900800 Oryza sativa OS01G0900800 I 0.861
Traes_3AL_B68C491B0 Triticum aestivum Traes_3AL_B68C491B0 I 0.861
TRAES3BF135900010CFD_g Triticum aestivum TRAES3BF135900010CFD_g I 0.861
TRIUR3_33816 Triticum urartu TRIUR3_33816 I 0.861
SapurV1A.0850s0170 Salix purpurea SapurV1A.0850s0170 I 0.861
GRMZM2G114873 Zea mays GRMZM2G114873 I 0.858
GSMUA_Achr1G27710_001 Musa acuminata GSMUA_Achr1G27710_001 I 0.858
GSMUA_Achr8G01370_001 Musa acuminata GSMUA_Achr8G01370_001 I 0.858
GSMUA_Achr8G32130_001 Musa acuminata GSMUA_Achr8G32130_001 I 0.858
Sb03g042860 Sorghum bicolor Sb03g042860 I 0.858
Si001123m.g Setaria italica Si001123m.g I 0.858
e_gw1.83.237.1 Physcomitrella patens e_gw1.83.237.1 I 0.858
Pavir.J01306 Panicum virgatum Pavir.J01306 I 0.858
GLYMA10G12150 Glycine max GLYMA10G12150 I 0.856
GSMUA_Achr5G22310_001 Musa acuminata GSMUA_Achr5G22310_001 I 0.856
PGSC0003DMG400008153 Solanum tuberosum PGSC0003DMG400008153 I 0.856
POPTR_0006s05640 Populus trichocarpa POPTR_0006s05640 I 0.856
POPTR_0016s05100 Populus trichocarpa POPTR_0016s05100 I 0.856
PRUPE_ppa006295mg Prunus persica PRUPE_ppa006295mg I 0.856
PRUPE_ppa019977mg Prunus persica PRUPE_ppa019977mg I 0.856
Solyc10g079050.1 Solanum lycopersicum Solyc10g079050.1 I 0.856
TCM_024842 Theobroma cacao TCM_024842 I 0.856
VIT_08s0007g07810 Vitis vinifera VIT_08s0007g07810 I 0.856
Cla017792 Citrullus lanatus Cla017792 I 0.856
Pm000447 Prunus mume Pm000447 I 0.856
Pm025821 Prunus mume Pm025821 I 0.856
29216.m000261 Ricinus communis 29216.m000261 I 0.856
cassava2126.valid.m1 Manihot esculenta cassava2126.valid.m1 I 0.856
cassava30692.valid.m1 Manihot esculenta cassava30692.valid.m1 I 0.856
cassava35967.valid.m1 Manihot esculenta cassava35967.valid.m1 I 0.856
cassava44054.valid.m1 Manihot esculenta cassava44054.valid.m1 I 0.856
Cucsa.242910 Cucumis sativus Cucsa.242910 I 0.856
mgf016734m Mimulus guttatus mgf016734m I 0.856
Aquca_009_00280 Aquilegia coerulea Aquca_009_00280 I 0.856
Ciclev10005233m.g Citrus clementina Ciclev10005233m.g I 0.856
Eucgr.A02417 Eucalyptus grandis Eucgr.A02417 I 0.856
evm.TU.supercontig_84.89 Carica papaya evm.TU.supercontig_84.89 I 0.856
gene00545-v1.0-hybrid Fragaria vesca gene00545-v1.0-hybrid I 0.856
gene20622-v1.0-hybrid Fragaria vesca gene20622-v1.0-hybrid I 0.856
Gorai.002G228900 Gossypium raimondii Gorai.002G228900 I 0.856
Gorai.006G140200 Gossypium raimondii Gorai.006G140200 I 0.856
Lus10021023.g Linum usitatissimum Lus10021023.g I 0.856
Lus10031255.g Linum usitatissimum Lus10031255.g I 0.856
Lus10031826.g Linum usitatissimum Lus10031826.g I 0.856
MDP0000180376 Malus domestica MDP0000180376 I 0.856
orange1.1g018007m.g Citrus sinensis orange1.1g018007m.g I 0.856
SapurV1A.0018s0320 Salix purpurea SapurV1A.0018s0320 I 0.856
SapurV1A.0133s0050 Salix purpurea SapurV1A.0133s0050 I 0.856
PK18038.1 Cannabis sativa PK18038.1 I 0.856
PDK_20s1391471g001 Phoenix dactylifera PDK_20s1391471g001 I 0.856
PGSC0003DMG400025263 Solanum tuberosum PGSC0003DMG400025263 I 0.854
POPTR_0009s06910 Populus trichocarpa POPTR_0009s06910 I 0.854
Solyc01g086870.2 Solanum lycopersicum Solyc01g086870.2 I 0.854
VIT_13s0064g01290 Vitis vinifera VIT_13s0064g01290 I 0.854
30152.m002405 Ricinus communis 30152.m002405 I 0.854
cassava29651.valid.m1 Manihot esculenta cassava29651.valid.m1 I 0.854
GSMUA_Achr7G20490_001 Musa acuminata GSMUA_Achr7G20490_001 I 0.845
BGIOSGA028963 Oryza indica BGIOSGA028963 I 0.844
BGIOSGA031008 Oryza indica BGIOSGA031008 I 0.844
BRADI3G39927 Brachypodium distachyon BRADI3G39927 I 0.844
F775_24151 Aegilops tauschii F775_24151 I 0.844
MLOC_67834 Hordeum vulgare MLOC_67834 I 0.844
OB08G26810 Oryza brachyantha OB08G26810 I 0.844
OBART08G19860 Oryza barthii OBART08G19860 I 0.844
OBART09G14660 Oryza barthii OBART09G14660 I 0.844
OGLUM08G21000 Oryza glumaepatula OGLUM08G21000 I 0.844
OGLUM09G15300 Oryza glumaepatula OGLUM09G15300 I 0.844
OLONG_017566 Oryza longistaminata OLONG_017566 I 0.844
OMERI08G16700 Oryza meridionalis OMERI08G16700 I 0.844
OMERI09G11370 Oryza meridionalis OMERI09G11370 I 0.844
ONIVA08G17500 Oryza nivara ONIVA08G17500 I 0.844
ONIVA08G22410 Oryza nivara ONIVA08G22410 I 0.844
OPUNC08G18020 Oryza punctata OPUNC08G18020 I 0.844
OPUNC09G13060 Oryza punctata OPUNC09G13060 I 0.844
ORGLA08G0174800 Oryza glaberrima ORGLA08G0174800 I 0.844
ORGLA09G0112900 Oryza glaberrima ORGLA09G0112900 I 0.844
ORUFI08G22260 Oryza rufipogon ORUFI08G22260 I 0.844
ORUFI09G15820 Oryza rufipogon ORUFI09G15820 I 0.844
OS08G0506700 Oryza sativa OS08G0506700 D 0.844
OS09G0487900 Oryza sativa OS09G0487900 I 0.844
Traes_7AS_4FAB72487 Triticum aestivum Traes_7AS_4FAB72487 I 0.844
Traes_7DS_B671A4EAD Triticum aestivum Traes_7DS_B671A4EAD I 0.844
TRIUR3_26625 Triticum urartu TRIUR3_26625 I 0.844
evm.TU.supercontig_85.115 Carica papaya evm.TU.supercontig_85.115 I 0.844
SapurV1A.0111s0030 Salix purpurea SapurV1A.0111s0030 I 0.841
SapurV1A.1898s0040 Salix purpurea SapurV1A.1898s0040 I 0.841
PDK_20s1484071g001 Phoenix dactylifera PDK_20s1484071g001 I 0.841
PDK_20s1630671g001 Phoenix dactylifera PDK_20s1630671g001 I 0.841