Carubv10023498m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10023498m.g T049430_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G42280
M06733_2.00 		Arabidopsis thaliana
DNCMACTTGYH
DRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH130_col_a 		0.914 1.000
OS08G0506700
M01755_2.00 		Oryza sativa
NCCACTTGN
NCAAGTGGN		 PBM
Weirauch et al.(2014)
pTH8547 		0.844 0.961
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023498m bHLH 289 339

Links

Other bHLH family TFs
Other Capsella rubella TFs

172 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT2G42280 Arabidopsis thaliana AT2G42280 D 0.914
POPTR_0003s22290 Populus trichocarpa POPTR_0003s22290 I 0.914
scaffold_403077.1 Arabidopsis lyrata scaffold_403077.1 I 0.914
VIT_06s0004g01740 Vitis vinifera VIT_06s0004g01740 I 0.914
30169.m006403 Ricinus communis 30169.m006403 I 0.914
Cagra.2636s0012 Capsella grandiflora Cagra.2636s0012 I 0.914
MDP0000307685 Malus domestica MDP0000307685 I 0.914
SapurV1A.0009s0400 Salix purpurea SapurV1A.0009s0400 I 0.914
LPERR08G16800 Leersia perrieri LPERR08G16800 I 0.902
LPERR09G10800 Leersia perrieri LPERR09G10800 I 0.902
Bostr.25993s0551 Boechera stricta Bostr.25993s0551 I 0.893
BGIOSGA016651 Oryza indica BGIOSGA016651 I 0.887
BRADI3G48070 Brachypodium distachyon BRADI3G48070 I 0.887
LPERR04G13560 Leersia perrieri LPERR04G13560 I 0.887
MLOC_12058 Hordeum vulgare MLOC_12058 I 0.887
OB04G24170 Oryza brachyantha OB04G24170 I 0.887
OBART04G16900 Oryza barthii OBART04G16900 I 0.887
OGLUM04G16920 Oryza glumaepatula OGLUM04G16920 I 0.887
OMERI04G14260 Oryza meridionalis OMERI04G14260 I 0.887
ONIVA04G15000 Oryza nivara ONIVA04G15000 I 0.887
OPUNC04G14700 Oryza punctata OPUNC04G14700 I 0.887
ORGLA04G0140000 Oryza glaberrima ORGLA04G0140000 I 0.887
ORUFI04G18350 Oryza rufipogon ORUFI04G18350 I 0.887
OS04G0489600 Oryza sativa OS04G0489600 I 0.887
Ca_07284 Cicer arietinum Ca_07284 I 0.881
e_gw1.272.41.1 Physcomitrella patens e_gw1.272.41.1 I 0.880
Bo4g015860 Brassica oleracea Bo4g015860 I 0.879
Bra004678 Brassica rapa Bra004678 I 0.879
MTR_1g052470 Medicago truncatula MTR_1g052470 I 0.879
MTR_4g065870 Medicago truncatula MTR_4g065870 I 0.879
Ca_18899 Cicer arietinum Ca_18899 I 0.879
Cla006394 Citrullus lanatus Cla006394 I 0.879
Cucsa.143260 Cucumis sativus Cucsa.143260 I 0.879
mgf016092m Mimulus guttatus mgf016092m I 0.879
MTR_7g092540 Medicago truncatula MTR_7g092540 I 0.875
Bo5g006980 Brassica oleracea Bo5g006980 I 0.870
Bo5g007030 Brassica oleracea Bo5g007030 I 0.870
Bra015456 Brassica rapa Bra015456 I 0.870
Eucgr.A00213 Eucalyptus grandis Eucgr.A00213 I 0.870
Lus10025518.g Linum usitatissimum Lus10025518.g I 0.870
Lus10026733.g Linum usitatissimum Lus10026733.g I 0.870
PDK_20s1546591g001 Phoenix dactylifera PDK_20s1546591g001 I 0.870
BRADI4G33670 Brachypodium distachyon BRADI4G33670 I 0.867
GRMZM2G142932 Zea mays GRMZM2G142932 I 0.867
GRMZM2G153454 Zea mays GRMZM2G153454 I 0.867
MLOC_30102 Hordeum vulgare MLOC_30102 I 0.867
Sb07g027810 Sorghum bicolor Sb07g027810 I 0.867
Si013950m.g Setaria italica Si013950m.g I 0.867
Si030166m.g Setaria italica Si030166m.g I 0.867
Traes_5BL_4317E525B Triticum aestivum Traes_5BL_4317E525B I 0.867
Pavir.Ba00676 Panicum virgatum Pavir.Ba00676 I 0.867
Pavir.Bb03157 Panicum virgatum Pavir.Bb03157 I 0.867
Pavir.Fa00493 Panicum virgatum Pavir.Fa00493 I 0.867
Pavir.J25484 Panicum virgatum Pavir.J25484 I 0.867
BHLH128 Arabidopsis thaliana AT1G05805 I 0.866
F775_26506 Aegilops tauschii F775_26506 I 0.866
fgenesh2_kg.1__542__AT1G05805.1 Arabidopsis lyrata fgenesh2_kg.1__542__AT1G05805.1 I 0.866
MTR_1g116790 Medicago truncatula MTR_1g116790 I 0.866
Traes_6AL_9437F730F Triticum aestivum Traes_6AL_9437F730F I 0.866
Traes_6BL_868408DFC Triticum aestivum Traes_6BL_868408DFC I 0.866
Traes_6DL_62A15AED6 Triticum aestivum Traes_6DL_62A15AED6 I 0.866
TRIUR3_16394 Triticum urartu TRIUR3_16394 I 0.866
Ca_14007 Cicer arietinum Ca_14007 I 0.866
Cucsa.094340 Cucumis sativus Cucsa.094340 I 0.866
Bostr.25219s0385 Boechera stricta Bostr.25219s0385 I 0.866
Cagra.1671s0210 Capsella grandiflora Cagra.1671s0210 I 0.866
Carubv10009382m.g Capsella rubella Carubv10009382m.g I 0.866
Ciclev10020681m.g Citrus clementina Ciclev10020681m.g I 0.866
orange1.1g038558m.g Citrus sinensis orange1.1g038558m.g I 0.866
Thhalv10008050m.g Eutrema salsugineum Thhalv10008050m.g I 0.866
BGIOSGA004992 Oryza indica BGIOSGA004992 I 0.861
BRADI2G57800 Brachypodium distachyon BRADI2G57800 I 0.861
F775_24576 Aegilops tauschii F775_24576 I 0.861
LPERR01G35240 Leersia perrieri LPERR01G35240 I 0.861
MLOC_20318 Hordeum vulgare MLOC_20318 I 0.861
OB01G49420 Oryza brachyantha OB01G49420 I 0.861
OBART01G40680 Oryza barthii OBART01G40680 I 0.861
OGLUM01G44860 Oryza glumaepatula OGLUM01G44860 I 0.861
OLONG_004619 Oryza longistaminata OLONG_004619 I 0.861
OMERI01G37660 Oryza meridionalis OMERI01G37660 I 0.861
ONIVA01G45730 Oryza nivara ONIVA01G45730 I 0.861
OPUNC01G39450 Oryza punctata OPUNC01G39450 I 0.861
ORGLA01G0346300 Oryza glaberrima ORGLA01G0346300 I 0.861
ORUFI01G44010 Oryza rufipogon ORUFI01G44010 I 0.861
OS01G0900800 Oryza sativa OS01G0900800 I 0.861
Traes_3AL_B68C491B0 Triticum aestivum Traes_3AL_B68C491B0 I 0.861
TRAES3BF135900010CFD_g Triticum aestivum TRAES3BF135900010CFD_g I 0.861
TRIUR3_33816 Triticum urartu TRIUR3_33816 I 0.861
SapurV1A.0850s0170 Salix purpurea SapurV1A.0850s0170 I 0.861
GRMZM2G114873 Zea mays GRMZM2G114873 I 0.858
GSMUA_Achr1G27710_001 Musa acuminata GSMUA_Achr1G27710_001 I 0.858
GSMUA_Achr8G01370_001 Musa acuminata GSMUA_Achr8G01370_001 I 0.858
GSMUA_Achr8G32130_001 Musa acuminata GSMUA_Achr8G32130_001 I 0.858
Sb03g042860 Sorghum bicolor Sb03g042860 I 0.858
Si001123m.g Setaria italica Si001123m.g I 0.858
e_gw1.83.237.1 Physcomitrella patens e_gw1.83.237.1 I 0.858
Pavir.J01306 Panicum virgatum Pavir.J01306 I 0.858
GLYMA10G12150 Glycine max GLYMA10G12150 I 0.856
GSMUA_Achr5G22310_001 Musa acuminata GSMUA_Achr5G22310_001 I 0.856
PGSC0003DMG400008153 Solanum tuberosum PGSC0003DMG400008153 I 0.856
POPTR_0006s05640 Populus trichocarpa POPTR_0006s05640 I 0.856
POPTR_0016s05100 Populus trichocarpa POPTR_0016s05100 I 0.856
PRUPE_ppa006295mg Prunus persica PRUPE_ppa006295mg I 0.856
PRUPE_ppa019977mg Prunus persica PRUPE_ppa019977mg I 0.856
Solyc10g079050.1 Solanum lycopersicum Solyc10g079050.1 I 0.856
TCM_024842 Theobroma cacao TCM_024842 I 0.856
VIT_08s0007g07810 Vitis vinifera VIT_08s0007g07810 I 0.856
Cla017792 Citrullus lanatus Cla017792 I 0.856
Pm000447 Prunus mume Pm000447 I 0.856
Pm025821 Prunus mume Pm025821 I 0.856
29216.m000261 Ricinus communis 29216.m000261 I 0.856
cassava2126.valid.m1 Manihot esculenta cassava2126.valid.m1 I 0.856
cassava30692.valid.m1 Manihot esculenta cassava30692.valid.m1 I 0.856
cassava35967.valid.m1 Manihot esculenta cassava35967.valid.m1 I 0.856
cassava44054.valid.m1 Manihot esculenta cassava44054.valid.m1 I 0.856
Cucsa.242910 Cucumis sativus Cucsa.242910 I 0.856
mgf016734m Mimulus guttatus mgf016734m I 0.856
Aquca_009_00280 Aquilegia coerulea Aquca_009_00280 I 0.856
Ciclev10005233m.g Citrus clementina Ciclev10005233m.g I 0.856
Eucgr.A02417 Eucalyptus grandis Eucgr.A02417 I 0.856
evm.TU.supercontig_84.89 Carica papaya evm.TU.supercontig_84.89 I 0.856
gene00545-v1.0-hybrid Fragaria vesca gene00545-v1.0-hybrid I 0.856
gene20622-v1.0-hybrid Fragaria vesca gene20622-v1.0-hybrid I 0.856
Gorai.002G228900 Gossypium raimondii Gorai.002G228900 I 0.856
Gorai.006G140200 Gossypium raimondii Gorai.006G140200 I 0.856
Lus10021023.g Linum usitatissimum Lus10021023.g I 0.856
Lus10031255.g Linum usitatissimum Lus10031255.g I 0.856
Lus10031826.g Linum usitatissimum Lus10031826.g I 0.856
MDP0000180376 Malus domestica MDP0000180376 I 0.856
orange1.1g018007m.g Citrus sinensis orange1.1g018007m.g I 0.856
SapurV1A.0018s0320 Salix purpurea SapurV1A.0018s0320 I 0.856
SapurV1A.0133s0050 Salix purpurea SapurV1A.0133s0050 I 0.856
PK18038.1 Cannabis sativa PK18038.1 I 0.856
PDK_20s1391471g001 Phoenix dactylifera PDK_20s1391471g001 I 0.856
PGSC0003DMG400025263 Solanum tuberosum PGSC0003DMG400025263 I 0.854
POPTR_0009s06910 Populus trichocarpa POPTR_0009s06910 I 0.854
Solyc01g086870.2 Solanum lycopersicum Solyc01g086870.2 I 0.854
VIT_13s0064g01290 Vitis vinifera VIT_13s0064g01290 I 0.854
30152.m002405 Ricinus communis 30152.m002405 I 0.854
cassava29651.valid.m1 Manihot esculenta cassava29651.valid.m1 I 0.854
GSMUA_Achr7G20490_001 Musa acuminata GSMUA_Achr7G20490_001 I 0.845
BGIOSGA028963 Oryza indica BGIOSGA028963 I 0.844
BGIOSGA031008 Oryza indica BGIOSGA031008 I 0.844
BRADI3G39927 Brachypodium distachyon BRADI3G39927 I 0.844
F775_24151 Aegilops tauschii F775_24151 I 0.844
MLOC_67834 Hordeum vulgare MLOC_67834 I 0.844
OB08G26810 Oryza brachyantha OB08G26810 I 0.844
OBART08G19860 Oryza barthii OBART08G19860 I 0.844
OBART09G14660 Oryza barthii OBART09G14660 I 0.844
OGLUM08G21000 Oryza glumaepatula OGLUM08G21000 I 0.844
OGLUM09G15300 Oryza glumaepatula OGLUM09G15300 I 0.844
OLONG_017566 Oryza longistaminata OLONG_017566 I 0.844
OMERI08G16700 Oryza meridionalis OMERI08G16700 I 0.844
OMERI09G11370 Oryza meridionalis OMERI09G11370 I 0.844
ONIVA08G17500 Oryza nivara ONIVA08G17500 I 0.844
ONIVA08G22410 Oryza nivara ONIVA08G22410 I 0.844
OPUNC08G18020 Oryza punctata OPUNC08G18020 I 0.844
OPUNC09G13060 Oryza punctata OPUNC09G13060 I 0.844
ORGLA08G0174800 Oryza glaberrima ORGLA08G0174800 I 0.844
ORGLA09G0112900 Oryza glaberrima ORGLA09G0112900 I 0.844
ORUFI08G22260 Oryza rufipogon ORUFI08G22260 I 0.844
ORUFI09G15820 Oryza rufipogon ORUFI09G15820 I 0.844
OS08G0506700 Oryza sativa OS08G0506700 D 0.844
OS09G0487900 Oryza sativa OS09G0487900 I 0.844
Traes_7AS_4FAB72487 Triticum aestivum Traes_7AS_4FAB72487 I 0.844
Traes_7DS_B671A4EAD Triticum aestivum Traes_7DS_B671A4EAD I 0.844
TRIUR3_26625 Triticum urartu TRIUR3_26625 I 0.844
evm.TU.supercontig_85.115 Carica papaya evm.TU.supercontig_85.115 I 0.844
SapurV1A.0111s0030 Salix purpurea SapurV1A.0111s0030 I 0.841
SapurV1A.1898s0040 Salix purpurea SapurV1A.1898s0040 I 0.841
PDK_20s1484071g001 Phoenix dactylifera PDK_20s1484071g001 I 0.841
PDK_20s1630671g001 Phoenix dactylifera PDK_20s1630671g001 I 0.841