Cagra.2093s0006 (Capsella grandiflora)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cagra.2093s0006 T049276_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH122
M06724_2.00 		Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN		 Dap-seq
OMalley et al.(2016)
bHLH122_col100_a 		0.914 1.000
BHLH122
M06725_2.00 		Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a 		0.914 1.000
OS08G0506700
M01755_2.00 		Oryza sativa
NCCACTTGN
NCAAGTGGN		 PBM
Weirauch et al.(2014)
pTH8547 		0.867 0.902
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2093s0006.1.p bHLH 309 359

Links

Other bHLH family TFs
Other Capsella grandiflora TFs

159 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH122 Arabidopsis thaliana AT1G51140 D 0.914
Bo4g191390 Brassica oleracea Bo4g191390 I 0.914
Bo6g024810 Brassica oleracea Bo6g024810 I 0.914
Bra016886 Brassica rapa Bra016886 I 0.914
Bra018896 Brassica rapa Bra018896 I 0.914
fgenesh2_kg.1__4183__AT1G51140.1 Arabidopsis lyrata fgenesh2_kg.1__4183__AT1G51140.1 I 0.914
GLYMA11G13960 Glycine max GLYMA11G13960 I 0.914
GLYMA12G05930 Glycine max GLYMA12G05930 I 0.914
GLYMA13G41670 Glycine max GLYMA13G41670 I 0.914
GLYMA15G03740 Glycine max GLYMA15G03740 I 0.914
GSMUA_Achr9G27780_001 Musa acuminata GSMUA_Achr9G27780_001 I 0.914
MTR_2g098310 Medicago truncatula MTR_2g098310 I 0.914
TCM_040564 Theobroma cacao TCM_040564 I 0.914
Ca_02662 Cicer arietinum Ca_02662 I 0.914
Ca_14223 Cicer arietinum Ca_14223 I 0.914
Bostr.26675s0074 Boechera stricta Bostr.26675s0074 I 0.914
Carubv10009458m.g Capsella rubella Carubv10009458m.g I 0.914
Ciclev10015437m.g Citrus clementina Ciclev10015437m.g I 0.914
Eucgr.B03669 Eucalyptus grandis Eucgr.B03669 I 0.914
Gorai.009G071900 Gossypium raimondii Gorai.009G071900 I 0.914
orange1.1g015337m.g Citrus sinensis orange1.1g015337m.g I 0.914
Thhalv10011463m.g Eutrema salsugineum Thhalv10011463m.g I 0.914
PK20089.1 Cannabis sativa PK20089.1 I 0.914
GRMZM2G085467 Zea mays GRMZM2G085467 I 0.902
GRMZM2G417597 Zea mays GRMZM2G417597 I 0.902
GSMUA_Achr3G11110_001 Musa acuminata GSMUA_Achr3G11110_001 I 0.902
Sb02g028300 Sorghum bicolor Sb02g028300 I 0.902
Si029614m.g Setaria italica Si029614m.g I 0.902
Eucgr.J00796 Eucalyptus grandis Eucgr.J00796 I 0.902
Pavir.Ba01718 Panicum virgatum Pavir.Ba01718 I 0.902
Pavir.J00377 Panicum virgatum Pavir.J00377 I 0.902
Pavir.J14004 Panicum virgatum Pavir.J14004 I 0.902
PDK_20s1302565g001 Phoenix dactylifera PDK_20s1302565g001 I 0.893
GLYMA10G12150 Glycine max GLYMA10G12150 I 0.879
GSMUA_Achr5G22310_001 Musa acuminata GSMUA_Achr5G22310_001 I 0.879
PGSC0003DMG400008153 Solanum tuberosum PGSC0003DMG400008153 I 0.879
POPTR_0006s05640 Populus trichocarpa POPTR_0006s05640 I 0.879
POPTR_0016s05100 Populus trichocarpa POPTR_0016s05100 I 0.879
PRUPE_ppa006295mg Prunus persica PRUPE_ppa006295mg I 0.879
PRUPE_ppa019977mg Prunus persica PRUPE_ppa019977mg I 0.879
Solyc10g079050.1 Solanum lycopersicum Solyc10g079050.1 I 0.879
TCM_024842 Theobroma cacao TCM_024842 I 0.879
VIT_08s0007g07810 Vitis vinifera VIT_08s0007g07810 I 0.879
Cla017792 Citrullus lanatus Cla017792 I 0.879
Pm000447 Prunus mume Pm000447 I 0.879
Pm025821 Prunus mume Pm025821 I 0.879
29216.m000261 Ricinus communis 29216.m000261 I 0.879
cassava2126.valid.m1 Manihot esculenta cassava2126.valid.m1 I 0.879
cassava30692.valid.m1 Manihot esculenta cassava30692.valid.m1 I 0.879
cassava35967.valid.m1 Manihot esculenta cassava35967.valid.m1 I 0.879
cassava44054.valid.m1 Manihot esculenta cassava44054.valid.m1 I 0.879
Cucsa.242910 Cucumis sativus Cucsa.242910 I 0.879
mgf016734m Mimulus guttatus mgf016734m I 0.879
Aquca_009_00280 Aquilegia coerulea Aquca_009_00280 I 0.879
Ciclev10005233m.g Citrus clementina Ciclev10005233m.g I 0.879
Eucgr.A02417 Eucalyptus grandis Eucgr.A02417 I 0.879
evm.TU.supercontig_84.89 Carica papaya evm.TU.supercontig_84.89 I 0.879
gene00545-v1.0-hybrid Fragaria vesca gene00545-v1.0-hybrid I 0.879
gene20622-v1.0-hybrid Fragaria vesca gene20622-v1.0-hybrid I 0.879
Gorai.002G228900 Gossypium raimondii Gorai.002G228900 I 0.879
Gorai.006G140200 Gossypium raimondii Gorai.006G140200 I 0.879
Lus10021023.g Linum usitatissimum Lus10021023.g I 0.879
Lus10031255.g Linum usitatissimum Lus10031255.g I 0.879
Lus10031826.g Linum usitatissimum Lus10031826.g I 0.879
MDP0000180376 Malus domestica MDP0000180376 I 0.879
orange1.1g018007m.g Citrus sinensis orange1.1g018007m.g I 0.879
SapurV1A.0018s0320 Salix purpurea SapurV1A.0018s0320 I 0.879
SapurV1A.0133s0050 Salix purpurea SapurV1A.0133s0050 I 0.879
PK18038.1 Cannabis sativa PK18038.1 I 0.879
PDK_20s1391471g001 Phoenix dactylifera PDK_20s1391471g001 I 0.879
PGSC0003DMG400025263 Solanum tuberosum PGSC0003DMG400025263 I 0.877
POPTR_0009s06910 Populus trichocarpa POPTR_0009s06910 I 0.877
Solyc01g086870.2 Solanum lycopersicum Solyc01g086870.2 I 0.877
VIT_13s0064g01290 Vitis vinifera VIT_13s0064g01290 I 0.877
30152.m002405 Ricinus communis 30152.m002405 I 0.877
cassava29651.valid.m1 Manihot esculenta cassava29651.valid.m1 I 0.877
fgenesh1_pg.scaffold_155000050 Physcomitrella patens fgenesh1_pg.scaffold_155000050 I 0.869
GSMUA_Achr7G20490_001 Musa acuminata GSMUA_Achr7G20490_001 I 0.868
BGIOSGA028963 Oryza indica BGIOSGA028963 I 0.867
BGIOSGA031008 Oryza indica BGIOSGA031008 I 0.867
BRADI3G39927 Brachypodium distachyon BRADI3G39927 I 0.867
F775_24151 Aegilops tauschii F775_24151 I 0.867
MLOC_67834 Hordeum vulgare MLOC_67834 I 0.867
OB08G26810 Oryza brachyantha OB08G26810 I 0.867
OBART08G19860 Oryza barthii OBART08G19860 I 0.867
OBART09G14660 Oryza barthii OBART09G14660 I 0.867
OGLUM08G21000 Oryza glumaepatula OGLUM08G21000 I 0.867
OGLUM09G15300 Oryza glumaepatula OGLUM09G15300 I 0.867
OLONG_017566 Oryza longistaminata OLONG_017566 I 0.867
OMERI08G16700 Oryza meridionalis OMERI08G16700 I 0.867
OMERI09G11370 Oryza meridionalis OMERI09G11370 I 0.867
ONIVA08G17500 Oryza nivara ONIVA08G17500 I 0.867
ONIVA08G22410 Oryza nivara ONIVA08G22410 I 0.867
OPUNC08G18020 Oryza punctata OPUNC08G18020 I 0.867
OPUNC09G13060 Oryza punctata OPUNC09G13060 I 0.867
ORGLA08G0174800 Oryza glaberrima ORGLA08G0174800 I 0.867
ORGLA09G0112900 Oryza glaberrima ORGLA09G0112900 I 0.867
ORUFI08G22260 Oryza rufipogon ORUFI08G22260 I 0.867
ORUFI09G15820 Oryza rufipogon ORUFI09G15820 I 0.867
OS08G0506700 Oryza sativa OS08G0506700 D 0.867
OS09G0487900 Oryza sativa OS09G0487900 I 0.867
Traes_7AS_4FAB72487 Triticum aestivum Traes_7AS_4FAB72487 I 0.867
Traes_7DS_B671A4EAD Triticum aestivum Traes_7DS_B671A4EAD I 0.867
TRIUR3_26625 Triticum urartu TRIUR3_26625 I 0.867
evm.TU.supercontig_85.115 Carica papaya evm.TU.supercontig_85.115 I 0.866
SapurV1A.0111s0030 Salix purpurea SapurV1A.0111s0030 I 0.864
SapurV1A.1898s0040 Salix purpurea SapurV1A.1898s0040 I 0.864
PDK_20s1484071g001 Phoenix dactylifera PDK_20s1484071g001 I 0.864
PDK_20s1630671g001 Phoenix dactylifera PDK_20s1630671g001 I 0.864
Bo4g015860 Brassica oleracea Bo4g015860 I 0.856
Bra004678 Brassica rapa Bra004678 I 0.856
MTR_1g052470 Medicago truncatula MTR_1g052470 I 0.856
MTR_4g065870 Medicago truncatula MTR_4g065870 I 0.856
Ca_18899 Cicer arietinum Ca_18899 I 0.856
Cla006394 Citrullus lanatus Cla006394 I 0.856
Cucsa.143260 Cucumis sativus Cucsa.143260 I 0.856
mgf016092m Mimulus guttatus mgf016092m I 0.856
TCM_005925 Theobroma cacao TCM_005925 I 0.855
Gorai.004G035800 Gossypium raimondii Gorai.004G035800 I 0.855
BGIOSGA008576 Oryza indica BGIOSGA008576 I 0.851
GRMZM2G437481 Zea mays GRMZM2G437481 I 0.851
LPERR02G18900 Leersia perrieri LPERR02G18900 I 0.851
OB02G30670 Oryza brachyantha OB02G30670 I 0.851
OBART02G23210 Oryza barthii OBART02G23210 I 0.851
OLONG_009256 Oryza longistaminata OLONG_009256 I 0.851
OMERI02G22740 Oryza meridionalis OMERI02G22740 I 0.851
ONIVA02G26110 Oryza nivara ONIVA02G26110 I 0.851
OPUNC02G21170 Oryza punctata OPUNC02G21170 I 0.851
ORGLA02G0200100 Oryza glaberrima ORGLA02G0200100 I 0.851
ORUFI02G24640 Oryza rufipogon ORUFI02G24640 I 0.851
Sb04g025260 Sorghum bicolor Sb04g025260 I 0.851
Sb06g020810 Sorghum bicolor Sb06g020810 I 0.851
Si010513m.g Setaria italica Si010513m.g I 0.851
Pavir.Ab02229 Panicum virgatum Pavir.Ab02229 I 0.851
Pavir.Ga01365 Panicum virgatum Pavir.Ga01365 I 0.851
Pavir.Gb01377 Panicum virgatum Pavir.Gb01377 I 0.851
Pavir.J08536 Panicum virgatum Pavir.J08536 I 0.851
Ciclev10031622m.g Citrus clementina Ciclev10031622m.g I 0.850
gene26967-v1.0-hybrid Fragaria vesca gene26967-v1.0-hybrid I 0.850
orange1.1g016638m.g Citrus sinensis orange1.1g016638m.g I 0.850
GLYMA02G29830 Glycine max GLYMA02G29830 I 0.849
SapurV1A.0027s0090 Salix purpurea SapurV1A.0027s0090 I 0.847
gw1.185.89.1 Physcomitrella patens gw1.185.89.1 I 0.845
BRADI4G33670 Brachypodium distachyon BRADI4G33670 I 0.844
GRMZM2G142932 Zea mays GRMZM2G142932 I 0.844
GRMZM2G153454 Zea mays GRMZM2G153454 I 0.844
MLOC_30102 Hordeum vulgare MLOC_30102 I 0.844
Sb07g027810 Sorghum bicolor Sb07g027810 I 0.844
Si013950m.g Setaria italica Si013950m.g I 0.844
Si030166m.g Setaria italica Si030166m.g I 0.844
Traes_5BL_4317E525B Triticum aestivum Traes_5BL_4317E525B I 0.844
Pavir.Ba00676 Panicum virgatum Pavir.Ba00676 I 0.844
Pavir.Bb03157 Panicum virgatum Pavir.Bb03157 I 0.844
Pavir.Fa00493 Panicum virgatum Pavir.Fa00493 I 0.844
Pavir.J25484 Panicum virgatum Pavir.J25484 I 0.844
SELMODRAFT_402301 Selaginella moellendorffii SELMODRAFT_402301 I 0.843
GSMUA_Achr6G21220_001 Musa acuminata GSMUA_Achr6G21220_001 I 0.840
Pavir.Aa01423 Panicum virgatum Pavir.Aa01423 I 0.840
e_gw1.273.42.1 Physcomitrella patens e_gw1.273.42.1 I 0.839