CpipJ_CPIJ010652 (Culex pipiens)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 CpipJ_CPIJ010652 T077684_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bowl
M03676_2.00 		Drosophila melanogaster
GCGTAABACNRGKAGYN
NRCTMCYNGTVTTACGC		 SELEX
Nitta et al.(2015)
bowl_1 		0.809 0.939
bowl
M03677_2.00 		Drosophila melanogaster
NGCTACYGTRTTACGCN
NGCGTAAYACRGTAGCN		 SELEX
Nitta et al.(2015)
bowl_2 		0.809 0.939
sob
M03674_2.00 		Drosophila melanogaster
RCTACYGNRTTACGCV
BGCGTAAYNCRGTAGY		 SELEX
Nitta et al.(2015)
sob_1 		0.809 0.939
sob
M03675_2.00 		Drosophila melanogaster
NGCGTAABNSNRGTAGY
RCTACYNSNVTTACGCN		 SELEX
Nitta et al.(2015)
sob_2 		0.809 0.939
bowl
M06090_2.00 		Drosophila melanogaster
RCTWCYGK
MCRGWAGY		 B1H
Zhu et al.(2011)
bowl_SANGER_5_FBgn0004893 		0.809 0.939
sob
M06088_2.00 		Drosophila melanogaster
GCTWCTGBDNBDV
BHVNHVCAGWAGC		 B1H
Zhu et al.(2011)
sob_SANGER_10_FBgn0004892 		0.809 0.939
sob
M06089_2.00 		Drosophila melanogaster
BDGCTACYGKDBNN
NNVHMCRGTAGCHV		 B1H
Zhu et al.(2011)
sob_SOLEXA_5_FBgn0004892 		0.809 0.939
OSR2
M04521_2.00 		Homo sapiens
NGCTACYGBD
HVCRGTAGCN		 SELEX
Yin et al.(2017)
OSR2_eDBD_HT-SELEX 		0.793 0.887
OSR2
M08324_2.00 		Homo sapiens
NBDGCTNCTGN
NCAGNAGCHVN		 ChIP-seq
Schmitges et al.(2016)
Q8N2R0.MEME 		0.793 0.887
OSR2
M08908_2.00 		Homo sapiens
NBHNYWGCTNCTSHDB
VHDSAGNAGCWRNDVN		 Misc
Kulakovskiy et al.(2013)
OSR2_HUMAN.H11MO.0.C 		0.793 0.887
OSR2
M04522_2.00 		Homo sapiens
NGCTACTGND
HNCAGTAGCN		 SELEX
Yin et al.(2017)
OSR2_eDBD_Methyl-HT-SELEX 		0.793 0.887
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ010652-RA C2H2 ZF 240 262
CpipJ_CPIJ010652-RA C2H2 ZF 268 290
CpipJ_CPIJ010652-RA C2H2 ZF 296 318
CpipJ_CPIJ010652-RA C2H2 ZF 324 346
CpipJ_CPIJ010652-RA C2H2 ZF 352 374

Links

Other C2H2 ZF family TFs
Other Culex pipiens TFs

110 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB98 Arabidopsis thaliana AT4G18770 D 0.000
Cagra.0891s0081 Capsella grandiflora Cagra.0891s0081 I 0.000
MYB98 Arabidopsis lyrata scaffold_702543.1 I 0.000
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I 0.000
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.000
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.000
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.000
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.000
30147.m013937 Ricinus communis 30147.m013937 I 0.000
29917.m001977 Ricinus communis 29917.m001977 I 0.000
Pm024743 Prunus mume Pm024743 I 0.000
Pm000541 Prunus mume Pm000541 I 0.000
Cla019490 Citrullus lanatus Cla019490 I 0.000
Ca_17294 Cicer arietinum Ca_17294 I 0.000
Ca_17087 Cicer arietinum Ca_17087 I 0.000
Ca_07482 Cicer arietinum Ca_07482 I 0.000
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.000
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.000
Traes_7DS_E27ECBC6E Triticum aestivum Traes_7DS_E27ECBC6E I 0.000
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.000
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.000
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.000
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.000
TCM_012087 Theobroma cacao TCM_012087 I 0.000
Si039046m.g Setaria italica Si039046m.g I 0.000
Thhalv10026824m.g Eutrema salsugineum Thhalv10026824m.g I 0.000
Lus10039966.g Linum usitatissimum Lus10039966.g I 0.000
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.000
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.000
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.000
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.000
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.000
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.000
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.000
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.000
MDP0000319656 Malus domestica MDP0000319656 I 0.000
MDP0000215359 Malus domestica MDP0000215359 I 0.000
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.000
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I 0.000
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.000
Lus10002384.g Linum usitatissimum Lus10002384.g I 0.000
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.000
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.000
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.000
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.000
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.000
Eucgr.B00300 Eucalyptus grandis Eucgr.B00300 I 0.000
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.000
Carubv10028458m.g Capsella rubella Carubv10028458m.g I 0.000
Carubv10006734m.g Capsella rubella Carubv10006734m.g I 0.000
Bra020992 Brassica rapa Bra020992 I 0.000
LPERR12G04190 Leersia perrieri LPERR12G04190 I 0.000
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.000
GSMUA_Achr6G06490_001 Musa acuminata GSMUA_Achr6G06490_001 I 0.000
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.000
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.000
GRMZM2G302549 Zea mays GRMZM2G302549 I 0.000
GLYMA06G19280 Glycine max GLYMA06G19280 I 0.000
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.000
fgenesh2_kg.3__2684__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.3__2684__AT5G58850.1 I 0.000
fgenesh2_kg.277__1__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.277__1__AT5G58850.1 I 0.000
F775_22212 Aegilops tauschii F775_22212 I 0.000
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.000
Bra020346 Brassica rapa Bra020346 I 0.000
Bra013346 Brassica rapa Bra013346 I 0.000
Bra012579 Brassica rapa Bra012579 I 0.000
Bra006744 Brassica rapa Bra006744 I 0.000
Bo7g106240 Brassica oleracea Bo7g106240 I 0.000
Bo3g157300 Brassica oleracea Bo3g157300 I 0.000
Bo3g018490 Brassica oleracea Bo3g018490 I 0.000
Bo2g028290 Brassica oleracea Bo2g028290 I 0.000
Bo1g019910 Brassica oleracea Bo1g019910 I 0.000
BGIOSGA036541 Oryza indica BGIOSGA036541 I 0.000
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.000
OMERI12G02760 Oryza meridionalis OMERI12G02760 I 0.000
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.000
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.000
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I 0.000
OS06G0162700 Oryza sativa OS06G0162700 I 0.000
ORUFI12G05180 Oryza rufipogon ORUFI12G05180 I 0.000
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.000
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.000
OPUNC12G04510 Oryza punctata OPUNC12G04510 I 0.000
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.000
ONIVA12G04220 Oryza nivara ONIVA12G04220 I 0.000
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.000
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.000
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.000
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.000
OLONG_008158 Oryza longistaminata OLONG_008158 I 0.000
OGLUM12G05330 Oryza glumaepatula OGLUM12G05330 I 0.000
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.000
OBART12G04500 Oryza barthii OBART12G04500 I 0.000
OBART12G04480 Oryza barthii OBART12G04480 I 0.000
OBART06G04170 Oryza barthii OBART06G04170 I 0.000
OB12G14410 Oryza brachyantha OB12G14410 I 0.000
OB06G13860 Oryza brachyantha OB06G13860 I 0.000
MTR_5g049190 Medicago truncatula MTR_5g049190 I 0.000