AMTR_s00022p00165560 (Amborella trichopoda)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 AMTR_s00022p00165560 T080674_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZFP5
M01851_2.00 		Arabidopsis thaliana
DSWTNNNN
NNNNAWSH		 PBM
Weirauch et al.(2014)
pTH7539 		0.764 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN11572 C2H2 ZF 78 100

Links

Other C2H2 ZF family TFs
Other Amborella trichopoda TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK07402.1 Cannabis sativa PK07402.1 D 0.000
29729.m002292 Ricinus communis 29729.m002292 I 0.000
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.000
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.000
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.000
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.000
MDP0000446783 Malus domestica MDP0000446783 I 0.000
MDP0000165880 Malus domestica MDP0000165880 I 0.000
MDP0000147009 Malus domestica MDP0000147009 I 0.000
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.000
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.000
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.000
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I 0.000
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.000
Cucsa.119440 Cucumis sativus Cucsa.119440 I 0.000
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.000
AMTR_s00023p00044590 Amborella trichopoda AMTR_s00023p00044590 I 0.000
Pm018989 Prunus mume Pm018989 I 0.000
Cla006713 Citrullus lanatus Cla006713 I 0.000
Cla001755 Citrullus lanatus Cla001755 I 0.000
Ca_14133 Cicer arietinum Ca_14133 I 0.000
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.000
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.000
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.000
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.000
MTR_0939s0010 Medicago truncatula MTR_0939s0010 I 0.000
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.000
GLYMA13G38030 Glycine max GLYMA13G38030 I 0.000
GLYMA12G32400 Glycine max GLYMA12G32400 I 0.000
GLYMA12G11150 Glycine max GLYMA12G11150 I 0.000
GLYMA06G45680 Glycine max GLYMA06G45680 I 0.000
MTR_2g089170 Medicago truncatula MTR_2g089170 N 0.000