Bra029186 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra029186 T081951_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YY1
M01443_2.00 		Arabidopsis thaliana
NNNVCWYNN
NNRWGBNNN		 PBM
Najafabadi et al.(2015a)
pTH11160 		0.817 0.913
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra029186.1-P C2H2 ZF 82 106
Bra029186.1-P C2H2 ZF 111 135
Bra029186.1-P C2H2 ZF 141 165
Bra029186.1-P C2H2 ZF 171 196
Bra029186.1-P C2H2 ZF 235 260

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_29010 Aegilops tauschii F775_29010 N
GRMZM2G094352 Zea mays GRMZM2G094352 N
MLOC_61530 Hordeum vulgare MLOC_61530 N
OGLUM08G04900 Oryza glumaepatula OGLUM08G04900 N
OLONG_015530 Oryza longistaminata OLONG_015530 N
OMERI08G04650 Oryza meridionalis OMERI08G04650 N
TGAL10 Oryza sativa OS08G0176900 N
Traes_2AL_BD0C7A9A5 Triticum aestivum Traes_2AL_BD0C7A9A5 N
Traes_2BL_9528AAD7C Triticum aestivum Traes_2BL_9528AAD7C N
TRIUR3_28368 Triticum urartu TRIUR3_28368 N
Pavir.Fb00495 Panicum virgatum Pavir.Fb00495 N