bcl11ab (Tetraodon nigroviridis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTNIG00000012076 T112075_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.815 0.939
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.815 0.939
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.815 0.939
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.811 0.921
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.811 0.921
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000001110 C2H2 ZF 212 233
ENSTNIP00000001110 C2H2 ZF 239 261
ENSTNIP00000001110 C2H2 ZF 519 541
ENSTNIP00000001110 C2H2 ZF 547 569
ENSTNIP00000001110 C2H2 ZF 577 600
ENSTNIP00000015040 C2H2 ZF 455 476
ENSTNIP00000015040 C2H2 ZF 482 504
ENSTNIP00000015040 C2H2 ZF 758 780
ENSTNIP00000015040 C2H2 ZF 786 808
ENSTNIP00000015040 C2H2 ZF 816 839

Links

Other C2H2 ZF family TFs
Other Tetraodon nigroviridis TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LjSGA_144865.1 Lotus japonicus LjSGA_144865.1 I 0.000
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.000
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.000
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.000
PGSC0003DMG400027798 Solanum tuberosum PGSC0003DMG400027798 N 0.000
Thhalv10018331m.g Eutrema salsugineum Thhalv10018331m.g N 0.000
Traes_2AL_C70217249 Triticum aestivum Traes_2AL_C70217249 N 0.000
Solyc11g013480.1 Solanum lycopersicum Solyc11g013480.1 N 0.000
Si021833m.g Setaria italica Si021833m.g N 0.000
Bo6g081980 Brassica oleracea Bo6g081980 N 0.000
OPUNC04G28180 Oryza punctata OPUNC04G28180 N 0.000
OB04G37650 Oryza brachyantha OB04G37650 N 0.000
GRMZM5G808366 Zea mays GRMZM5G808366 N 0.000
GRMZM2G023813 Zea mays GRMZM2G023813 N 0.000
GLYMA04G43350 Glycine max GLYMA04G43350 N 0.000
BRADI5G27400 Brachypodium distachyon BRADI5G27400 N 0.000
Bra003665 Brassica rapa Bra003665 N 0.000