Pavir.J37640 (Panicum virgatum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Pavir.J37640 T024000_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.742 0.742
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J37640.1.p B3 67 169

Links

Other B3 family TFs
Other Panicum virgatum TFs

224 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.938
Si021833m.g Setaria italica Si021833m.g N 0.856
ONIVA04G29840 Oryza nivara ONIVA04G29840 N 0.825
LPERR04G26090 Leersia perrieri LPERR04G26090 N 0.804
OPUNC04G28180 Oryza punctata OPUNC04G28180 N 0.804
BGIOSGA014036 Oryza indica BGIOSGA014036 N 0.798
OBART04G30660 Oryza barthii OBART04G30660 N 0.798
OGLUM04G30530 Oryza glumaepatula OGLUM04G30530 N 0.798
OMERI04G25770 Oryza meridionalis OMERI04G25770 N 0.798
ORGLA04G0270000 Oryza glaberrima ORGLA04G0270000 N 0.798
ARF13 Oryza sativa OS04G0690600 N 0.798
Sb06g033970 Sorghum bicolor Sb06g033970 N 0.796
OB04G37650 Oryza brachyantha OB04G37650 N 0.773
BRADI5G27400 Brachypodium distachyon BRADI5G27400 N 0.765
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.763
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.763
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.763
GRMZM5G808366 Zea mays GRMZM5G808366 N 0.755
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.753
Bra024109 Brassica rapa Bra024109 I 0.753
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.753
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.753
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.753
OB06G32920 Oryza brachyantha OB06G32920 I 0.753
OBART06G25230 Oryza barthii OBART06G25230 I 0.753
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.753
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.753
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.753
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.753
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.753
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.753
ARF18 Oryza sativa OS06G0685700 I 0.753
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.753
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.753
Si005991m.g Setaria italica Si005991m.g I 0.753
Traes_2AL_C70217249 Triticum aestivum Traes_2AL_C70217249 N 0.753
mgf000336m Mimulus guttatus mgf000336m I 0.753
mgf005300m Mimulus guttatus mgf005300m I 0.753
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.753
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.753
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.753
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.753
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.750
ARF16 Arabidopsis thaliana AT4G30080 D 0.742
Bo1g014600 Brassica oleracea Bo1g014600 I 0.742
Bo7g114200 Brassica oleracea Bo7g114200 I 0.742
Bra011162 Brassica rapa Bra011162 I 0.742
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.742
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.742
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.742
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.742
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.742
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.742
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.742
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.742
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.742
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.742
Cla018574 Citrullus lanatus Cla018574 I 0.742
Pm018533 Prunus mume Pm018533 I 0.742
Pm030120 Prunus mume Pm030120 I 0.742
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.742
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.742
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.742
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.742
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.742
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.742
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.742
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.742
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.742
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.742
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.742
PK17007.1 Cannabis sativa PK17007.1 I 0.742
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.740
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.740
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.740
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.740
Si016509m.g Setaria italica Si016509m.g I 0.740
mgf016139m Mimulus guttatus mgf016139m I 0.740
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.732
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.732
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.732
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.732
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.732
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.732
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.732
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.732
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.732
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.732
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.732
OB10G20590 Oryza brachyantha OB10G20590 I 0.732
OBART10G13410 Oryza barthii OBART10G13410 I 0.732
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.732
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.732
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.732
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.732
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.732
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.732
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.732
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.732
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.732
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.732
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.732
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.732
ARF8 Oryza sativa OS02G0628600 I 0.732
ARF22 Oryza sativa OS10G0479900 I 0.732
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.732
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.732
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.732
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.732
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.732
Si034525m.g Setaria italica Si034525m.g I 0.732
TCM_022163 Theobroma cacao TCM_022163 I 0.732
TCM_042067 Theobroma cacao TCM_042067 I 0.732
TCM_043157 Theobroma cacao TCM_043157 I 0.732
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.732
Ca_17136 Cicer arietinum Ca_17136 I 0.732
Pm019126 Prunus mume Pm019126 I 0.732
Pm031275 Prunus mume Pm031275 I 0.732
27538.m000327 Ricinus communis 27538.m000327 I 0.732
30078.m002329 Ricinus communis 30078.m002329 I 0.732
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.732
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.732
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.732
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.732
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.732
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.732
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.732
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.732
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.732
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.732
MDP0000131481 Malus domestica MDP0000131481 I 0.732
MDP0000221322 Malus domestica MDP0000221322 I 0.732
MDP0000256621 Malus domestica MDP0000256621 I 0.732
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.732
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.732
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.732
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.732
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.732
OB02G32150 Oryza brachyantha OB02G32150 I 0.729
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.729
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.722
F775_32978 Aegilops tauschii F775_32978 I 0.722
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.722
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.722
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.722
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.722
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.722
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.722
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.722
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.722
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.722
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.722
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.722
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.722
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.722
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.722
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.722
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.722
Ca_26121 Cicer arietinum Ca_26121 I 0.722
Cla022413 Citrullus lanatus Cla022413 I 0.722
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.722
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.722
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.722
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.722
mgf024607m Mimulus guttatus mgf024607m I 0.722
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I 0.722
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.722
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.722
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.722
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.722
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I 0.722
Ca_02541 Cicer arietinum Ca_02541 I 0.719
ARF10 Arabidopsis thaliana AT2G28350 I 0.711
Bra011955 Brassica rapa Bra011955 I 0.711
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.711
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.711
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.711
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.711
Si009541m.g Setaria italica Si009541m.g I 0.711
Cla013979 Citrullus lanatus Cla013979 I 0.711
29908.m005953 Ricinus communis 29908.m005953 I 0.711
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.711
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.711
Cagra.0096s0050 Capsella grandiflora Cagra.0096s0050 N 0.711
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.711
Carubv10019991m.g Capsella rubella Carubv10019991m.g N 0.711
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.711
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.711
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.711
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.711
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.711
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.711
MDP0000750392 Malus domestica MDP0000750392 I 0.711
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.711
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.711
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.711
PK13064.1 Cannabis sativa PK13064.1 I 0.711
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.708
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.708
LjSGA_144865.1 Lotus japonicus LjSGA_144865.1 I 0.707
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.705
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.704
ARF10 Oryza indica BGIOSGA016767 I 0.701
Bo4g071620 Brassica oleracea Bo4g071620 I 0.701
OBART04G18910 Oryza barthii OBART04G18910 I 0.701
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.701
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.701
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.701
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.701
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.701
OS04G0519700 Oryza sativa OS04G0519700 I 0.701
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.701
TCM_035002 Theobroma cacao TCM_035002 I 0.701
Cla008883 Citrullus lanatus Cla008883 I 0.701
27494.m000045 Ricinus communis 27494.m000045 I 0.701
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.701
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.701
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.701
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.701
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.701
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.701
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.701
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.701
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.701