Carubv10019991m.g (Capsella rubella)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Carubv10019991m.g T022885_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10019991m B3 146 248

Links

Other B3 family TFs
Other Capsella rubella TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0096s0050 Capsella grandiflora Cagra.0096s0050 N 1.000
Bostr.20129s0222 Boechera stricta Bostr.20129s0222 N 0.897
ARF17 Arabidopsis thaliana AT1G77850 N 0.887
Bo6g081980 Brassica oleracea Bo6g081980 N 0.887
Bra003665 Brassica rapa Bra003665 N 0.887
ARF17 Arabidopsis lyrata scaffold_202748.1 N 0.875
Thhalv10018331m.g Eutrema salsugineum Thhalv10018331m.g N 0.866
Bo6g121520 Brassica oleracea Bo6g121520 N 0.845
Bra015651 Brassica rapa Bra015651 N 0.845
Cagra.24523s0002 Capsella grandiflora Cagra.24523s0002 N 0.840
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.835
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.833
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.833
29908.m005953 Ricinus communis 29908.m005953 I 0.814
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.814
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.812
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.804
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.804
TCM_035002 Theobroma cacao TCM_035002 I 0.804
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.804
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.804
MDP0000256621 Malus domestica MDP0000256621 I 0.804
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I 0.804
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.804
Pm019126 Prunus mume Pm019126 I 0.794
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I 0.794
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I 0.794
Lus10024754.g Linum usitatissimum Lus10024754.g N 0.784
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.773
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.773
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.753
Cla022413 Citrullus lanatus Cla022413 I 0.753
gene16050-v1.0-hybrid Fragaria vesca gene16050-v1.0-hybrid N 0.753
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.750
MTR_3g073420 Medicago truncatula MTR_3g073420 N 0.735
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.732
MDP0000232116 Malus domestica MDP0000232116 N 0.724
PGSC0003DMG400027798 Solanum tuberosum PGSC0003DMG400027798 N 0.714
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.711
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.711
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.711
Bo4g071620 Brassica oleracea Bo4g071620 I 0.708
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.708
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.708
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.704
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.701
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.701