29908.m005953 (Ricinus communis)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 29908.m005953 T022184_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.722 0.722
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29908.m005953 B3 130 232

Links

Other B3 family TFs
Other Ricinus communis TFs

199 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.948
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.938
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.938
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.907
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.907
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.897
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I 0.897
TCM_035002 Theobroma cacao TCM_035002 I 0.876
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.876
Pm019126 Prunus mume Pm019126 I 0.866
MDP0000256621 Malus domestica MDP0000256621 I 0.866
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I 0.835
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.835
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.835
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I 0.835
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.825
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.825
Lus10024754.g Linum usitatissimum Lus10024754.g N 0.825
Cagra.0096s0050 Capsella grandiflora Cagra.0096s0050 N 0.814
Carubv10019991m.g Capsella rubella Carubv10019991m.g N 0.814
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.814
MTR_3g073420 Medicago truncatula MTR_3g073420 N 0.804
ARF17 Arabidopsis thaliana AT1G77850 N 0.794
Bo6g081980 Brassica oleracea Bo6g081980 N 0.784
Bra003665 Brassica rapa Bra003665 N 0.784
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.784
Cla022413 Citrullus lanatus Cla022413 I 0.784
Bostr.20129s0222 Boechera stricta Bostr.20129s0222 N 0.784
gene16050-v1.0-hybrid Fragaria vesca gene16050-v1.0-hybrid N 0.784
MDP0000232116 Malus domestica MDP0000232116 N 0.784
ARF17 Arabidopsis lyrata scaffold_202748.1 N 0.773
Thhalv10018331m.g Eutrema salsugineum Thhalv10018331m.g N 0.773
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.763
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.763
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.755
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.753
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.753
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.753
Bo4g071620 Brassica oleracea Bo4g071620 I 0.742
Bo6g121520 Brassica oleracea Bo6g121520 N 0.742
Bra011955 Brassica rapa Bra011955 I 0.742
Bra015651 Brassica rapa Bra015651 N 0.742
ARF10 Arabidopsis thaliana AT2G28350 I 0.732
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.732
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.732
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.732
TCM_022163 Theobroma cacao TCM_022163 I 0.732
30078.m002329 Ricinus communis 30078.m002329 I 0.732
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.732
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.732
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.732
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.732
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.732
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.732
Ca_11175 Cicer arietinum Ca_11175 N 0.725
ARF16 Arabidopsis thaliana AT4G30080 D 0.722
Bo1g014600 Brassica oleracea Bo1g014600 I 0.722
Bo7g114200 Brassica oleracea Bo7g114200 I 0.722
Bra011162 Brassica rapa Bra011162 I 0.722
GLYMA04G43350 Glycine max GLYMA04G43350 N 0.722
GLYMA13G02410 Glycine max GLYMA13G02410 N 0.722
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.722
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.722
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.722
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.722
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.722
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.722
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.722
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.722
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.722
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.722
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.722
Ca_26121 Cicer arietinum Ca_26121 I 0.722
Cla018574 Citrullus lanatus Cla018574 I 0.722
Pm030120 Prunus mume Pm030120 I 0.722
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.722
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.722
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.722
mgf000336m Mimulus guttatus mgf000336m I 0.722
mgf005300m Mimulus guttatus mgf005300m I 0.722
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.722
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.722
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.722
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.722
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.722
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.722
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.722
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.722
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.722
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.722
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.722
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.722
PK17007.1 Cannabis sativa PK17007.1 I 0.722
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.722
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.719
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.711
Bra024109 Brassica rapa Bra024109 I 0.711
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.711
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.711
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.711
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.711
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.711
OB06G32920 Oryza brachyantha OB06G32920 I 0.711
OBART06G25230 Oryza barthii OBART06G25230 I 0.711
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.711
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.711
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.711
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.711
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.711
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.711
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.711
ARF18 Oryza sativa OS06G0685700 I 0.711
PGSC0003DMG400027798 Solanum tuberosum PGSC0003DMG400027798 N 0.711
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.711
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.711
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.711
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.711
Si005991m.g Setaria italica Si005991m.g I 0.711
Solyc11g013480.1 Solanum lycopersicum Solyc11g013480.1 N 0.711
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.711
TCM_043157 Theobroma cacao TCM_043157 I 0.711
Cla013979 Citrullus lanatus Cla013979 I 0.711
Pm018533 Prunus mume Pm018533 I 0.711
27494.m000045 Ricinus communis 27494.m000045 I 0.711
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.711
mgf024607m Mimulus guttatus mgf024607m I 0.711
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.711
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.711
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.711
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.711
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.711
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.711
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.711
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.711
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.711
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.711
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.711
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.711
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.711
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.711
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.711
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.708
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.708
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.708
BGIOSGA014036 Oryza indica BGIOSGA014036 N 0.701
ARF10 Oryza indica BGIOSGA016767 I 0.701
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.701
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.701
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.701
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.701
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.701
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.701
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.701
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.701
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.701
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.701
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.701
OB10G20590 Oryza brachyantha OB10G20590 I 0.701
OBART04G18910 Oryza barthii OBART04G18910 I 0.701
OBART04G30660 Oryza barthii OBART04G30660 N 0.701
OBART10G13410 Oryza barthii OBART10G13410 I 0.701
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.701
OGLUM04G30530 Oryza glumaepatula OGLUM04G30530 N 0.701
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.701
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.701
OMERI04G25770 Oryza meridionalis OMERI04G25770 N 0.701
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.701
ONIVA04G29840 Oryza nivara ONIVA04G29840 N 0.701
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.701
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.701
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.701
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.701
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.701
ORGLA04G0270000 Oryza glaberrima ORGLA04G0270000 N 0.701
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.701
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.701
OS04G0519700 Oryza sativa OS04G0519700 I 0.701
ARF13 Oryza sativa OS04G0690600 N 0.701
ARF22 Oryza sativa OS10G0479900 I 0.701
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.701
Si009541m.g Setaria italica Si009541m.g I 0.701
Si034525m.g Setaria italica Si034525m.g I 0.701
TCM_042067 Theobroma cacao TCM_042067 I 0.701
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.701
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.701
Ca_02541 Cicer arietinum Ca_02541 I 0.701
Ca_17136 Cicer arietinum Ca_17136 I 0.701
Pm031275 Prunus mume Pm031275 I 0.701
27538.m000327 Ricinus communis 27538.m000327 I 0.701
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.701
mgf016139m Mimulus guttatus mgf016139m I 0.701
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.701
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.701
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.701
MDP0000131481 Malus domestica MDP0000131481 I 0.701
MDP0000221322 Malus domestica MDP0000221322 I 0.701
MDP0000750392 Malus domestica MDP0000750392 I 0.701
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.701
PK13064.1 Cannabis sativa PK13064.1 I 0.701