gene02234-v1.0-hybrid (Fragaria vesca)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 gene02234-v1.0-hybrid T023164_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna02234.1-v1.0-hybrid B3 141 244

Links

Other B3 family TFs
Other Fragaria vesca TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene16050-v1.0-hybrid Fragaria vesca gene16050-v1.0-hybrid N 0.928
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.918
Pm019126 Prunus mume Pm019126 I 0.897
MDP0000256621 Malus domestica MDP0000256621 I 0.897
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.866
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.856
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.847
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.847
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.845
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I 0.845
TCM_035002 Theobroma cacao TCM_035002 I 0.835
29908.m005953 Ricinus communis 29908.m005953 I 0.835
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.835
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I 0.814
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I 0.814
Cagra.0096s0050 Capsella grandiflora Cagra.0096s0050 N 0.812
Carubv10019991m.g Capsella rubella Carubv10019991m.g N 0.812
Cla022413 Citrullus lanatus Cla022413 I 0.794
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.794
Lus10024754.g Linum usitatissimum Lus10024754.g N 0.794
MDP0000232116 Malus domestica MDP0000232116 N 0.786
ARF17 Arabidopsis thaliana AT1G77850 N 0.784
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.784
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.784
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.784
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.773
ARF17 Arabidopsis lyrata scaffold_202748.1 N 0.765
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.755
Bo6g081980 Brassica oleracea Bo6g081980 N 0.753
Bra003665 Brassica rapa Bra003665 N 0.753
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.753
Bostr.20129s0222 Boechera stricta Bostr.20129s0222 N 0.753
MTR_3g073420 Medicago truncatula MTR_3g073420 N 0.745
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.737
PGSC0003DMG400027798 Solanum tuberosum PGSC0003DMG400027798 N 0.735
Solyc11g013480.1 Solanum lycopersicum Solyc11g013480.1 N 0.735
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.732
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.732
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.732
Thhalv10018331m.g Eutrema salsugineum Thhalv10018331m.g N 0.732
OB02G32150 Oryza brachyantha OB02G32150 I 0.729
Ca_02541 Cicer arietinum Ca_02541 I 0.729
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.722
ARF16 Arabidopsis thaliana AT4G30080 D 0.722
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.722
Bo1g014600 Brassica oleracea Bo1g014600 I 0.722
Bo6g121520 Brassica oleracea Bo6g121520 N 0.722
Bo7g114200 Brassica oleracea Bo7g114200 I 0.722
Bra011162 Brassica rapa Bra011162 I 0.722
Bra015651 Brassica rapa Bra015651 N 0.722
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.722
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.722
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.722
OB06G32920 Oryza brachyantha OB06G32920 I 0.722
OBART06G25230 Oryza barthii OBART06G25230 I 0.722
OBART10G13410 Oryza barthii OBART10G13410 I 0.722
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.722
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.722
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.722
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.722
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.722
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.722
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.722
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.722
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.722
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.722
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.722
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.722
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.722
ARF18 Oryza sativa OS06G0685700 I 0.722
ARF22 Oryza sativa OS10G0479900 I 0.722
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.722
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.722
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.722
Si005991m.g Setaria italica Si005991m.g I 0.722
Ca_26121 Cicer arietinum Ca_26121 I 0.722
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.722
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.722
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.722
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.722
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.722
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.722
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.722
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.722
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.719
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.719
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.719
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.719
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.719
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.719
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.719
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.719
ARF8 Oryza sativa OS02G0628600 I 0.719
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.719
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.719
GLYMA04G43350 Glycine max GLYMA04G43350 N 0.714
GLYMA13G02410 Glycine max GLYMA13G02410 N 0.714
Bra024109 Brassica rapa Bra024109 I 0.711
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.711
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.711
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.711
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.711
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.711
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.711
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.711
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.711
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.711
OB10G20590 Oryza brachyantha OB10G20590 I 0.711
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.711
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.711
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.711
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.711
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.711
Si034525m.g Setaria italica Si034525m.g I 0.711
Cla008883 Citrullus lanatus Cla008883 I 0.711
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.711
mgf024607m Mimulus guttatus mgf024607m I 0.711
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.711
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.711
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.711
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.711
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.711
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.711
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.711
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.711
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.708
Bo4g071620 Brassica oleracea Bo4g071620 I 0.708
F775_32978 Aegilops tauschii F775_32978 I 0.708
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.708
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.708
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.708
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.708
Si016509m.g Setaria italica Si016509m.g I 0.708
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.708
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.708
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.708
ARF10 Oryza indica BGIOSGA016767 I 0.704
OBART04G18910 Oryza barthii OBART04G18910 I 0.704
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.704
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.704
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.704
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.704
OS04G0519700 Oryza sativa OS04G0519700 I 0.704
TCM_043157 Theobroma cacao TCM_043157 I 0.704
27494.m000045 Ricinus communis 27494.m000045 I 0.704
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.701
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.701
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.701
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.701
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.701
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.701
Si009541m.g Setaria italica Si009541m.g I 0.701
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.701
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.701
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.701
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.701
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.701
MDP0000131481 Malus domestica MDP0000131481 I 0.701
MDP0000221322 Malus domestica MDP0000221322 I 0.701
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.701
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.701