gfi1b (Takifugu rubripes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTRUG00000004525 T112252_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.785 0.877
sens
M03666_2.00 		Drosophila melanogaster
TGCWSTGATTTATY
RATAAATCASWGCA		 SELEX
Nitta et al.(2015)
sens_1 		0.804 0.880
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.785 0.877
sens
M06056_2.00 		Drosophila melanogaster
AAATCACDGC
GCHGTGATTT		 B1H
Zhu et al.(2011)
sens_SANGER_10_FBgn0002573 		0.804 0.880
sens
M06057_2.00 		Drosophila melanogaster
NNNNAAATCACRGCH
DGCYGTGATTTNNNN		 B1H
Zhu et al.(2011)
sens_SOLEXA_5_FBgn0002573 		0.804 0.880
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.785 0.877
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.783 0.870
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.783 0.870
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.783 0.870
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.783 0.870
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.783 0.870
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.783 0.870
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.774 0.877
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.774 0.877
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.774 0.877
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.774 0.877
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.774 0.877
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.774 0.877
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.774 0.877
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.774 0.877
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.774 0.877
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.773 0.862
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.756 0.812
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000010746 C2H2 ZF 162 185
ENSTRUP00000010746 C2H2 ZF 191 213
ENSTRUP00000010746 C2H2 ZF 219 241
ENSTRUP00000010746 C2H2 ZF 247 269
ENSTRUP00000010746 C2H2 ZF 275 297
ENSTRUP00000010746 C2H2 ZF 303 326
ENSTRUP00000010747 C2H2 ZF 169 191
ENSTRUP00000010747 C2H2 ZF 197 219
ENSTRUP00000010747 C2H2 ZF 225 247
ENSTRUP00000010747 C2H2 ZF 253 276

Links

Other C2H2 ZF family TFs
Other Takifugu rubripes TFs

189 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA12G33751 Glycine max GLYMA12G33751 I
GLYMA13G36741 Glycine max GLYMA13G36741 I
Lus10013917.g Linum usitatissimum Lus10013917.g I
Lus10001885.g Linum usitatissimum Lus10001885.g I
Cucsa.200860 Cucumis sativus Cucsa.200860 I
Cla013743 Citrullus lanatus Cla013743 I
Ca_19863 Cicer arietinum Ca_19863 N
LjT46P06.140.nd Lotus japonicus LjT46P06.140.nd N
PK25264.1 Cannabis sativa PK25264.1 N
SapurV1A.2444s0040 Salix purpurea SapurV1A.2444s0040 N
SapurV1A.0958s0180 Salix purpurea SapurV1A.0958s0180 N
SapurV1A.0596s0110 Salix purpurea SapurV1A.0596s0110 N
Lus10038306.g Linum usitatissimum Lus10038306.g N
Eucgr.K01103 Eucalyptus grandis Eucgr.K01103 N
mgf022146m Mimulus guttatus mgf022146m N
29646.m001078 Ricinus communis 29646.m001078 N
GLYMA06G43560 Glycine max GLYMA06G43560 N
Ca_14981 Cicer arietinum Ca_14981 N
Ca_02482 Cicer arietinum Ca_02482 N
VIT_12s0028g02350 Vitis vinifera VIT_12s0028g02350 N
TCM_001690 Theobroma cacao TCM_001690 N
POPTR_0019s11870 Populus trichocarpa POPTR_0019s11870 N
POPTR_0013s12190 Populus trichocarpa POPTR_0013s12190 N
MTR_5g066080 Medicago truncatula MTR_5g066080 N
MTR_2g091190 Medicago truncatula MTR_2g091190 N
GSMUA_Achr5G29390_001 Musa acuminata GSMUA_Achr5G29390_001 N
GLYMA12G14400 Glycine max GLYMA12G14400 N