Afo_R004626 (Aptenodytes forsteri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Afo_R004626 T132789_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.827 1.000
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.827 1.000
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.806 0.947
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.806 0.947
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.806 0.947
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R004626 C2H2 ZF 409 430
Afo_R004626 C2H2 ZF 436 458
Afo_R004626 C2H2 ZF 766 788
Afo_R004626 C2H2 ZF 794 816
Afo_R004626 C2H2 ZF 824 847

Links

Other C2H2 ZF family TFs
Other Aptenodytes forsteri TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla014623 Citrullus lanatus Cla014623 N
chr6.LjT16B20.120.nc Lotus japonicus chr6.LjT16B20.120.nc N
chr4.CM0288.500.nc Lotus japonicus chr4.CM0288.500.nc N
orange1.1g008984m.g Citrus sinensis orange1.1g008984m.g N
MDP0000254936 Malus domestica MDP0000254936 N
Gorai.010G249400 Gossypium raimondii Gorai.010G249400 N
Gorai.009G184100 Gossypium raimondii Gorai.009G184100 N
evm.TU.supercontig_27.254 Carica papaya evm.TU.supercontig_27.254 N
Eucgr.D01435 Eucalyptus grandis Eucgr.D01435 N
Ciclev10014811m.g Citrus clementina Ciclev10014811m.g N
Cucsa.044690 Cucumis sativus Cucsa.044690 N
Pm012494 Prunus mume Pm012494 N
SCL13 Arabidopsis lyrata fgenesh2_kg.7__2586__AT4G17230.1 N
Ca_20223 Cicer arietinum Ca_20223 N
Ca_07887 Cicer arietinum Ca_07887 N
SCL13 Vitis vinifera VIT_00s0463g00020 N
TCM_030393 Theobroma cacao TCM_030393 N
Solyc11g012510.1 Solanum lycopersicum Solyc11g012510.1 N
PRUPE_ppa003910mg Prunus persica PRUPE_ppa003910mg N
MTR_4g133660 Medicago truncatula MTR_4g133660 N
GLYMA17G01150 Glycine max GLYMA17G01150 N
GLYMA15G12320 Glycine max GLYMA15G12320 N
GLYMA09G01440 Glycine max GLYMA09G01440 N
GLYMA07G39650 Glycine max GLYMA07G39650 N