CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_030393
(
Theobroma cacao
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
TCM_030393
T201623_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY28931
GRAS
178
548
LKQVLVACGQALHEGDMPTVAGLMHVLEKMVSVSGEPIQRLGAYVLEGLRARLESSGSSIYKALKCKEPTSSELMSYMHILFKVCPFWKFAYTSANVVIREVMEYEPKIHIIDFQIAQGTQWMFLIAALAKRPGGPPAIRITGIDDSQSNHARGGGLNIVGQRLSEFAKTYNVPFEFHDAAMSGCEVQLEHLKVQPGEALAVNFPYVLHHMPDESVSTWNHRDRLLRLVKSLLPKIVTLVEQESNTNTSPFFSRYLETLDYYTAMFESIDVACSRDDKQRINAEQHCVARDIVNMIACEGPERVERHELFGKWRSRFTMAGFSPYPLSSSVTMAVRDVLKDYNNNYRLEEREGALYLGWINRAMATSSAWR
Links
Other
GRAS
family TFs
Other
Theobroma cacao
TFs
37 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.009G184100
Gossypium raimondii
Gorai.009G184100
N
0.897
Gorai.010G249400
Gossypium raimondii
Gorai.010G249400
N
0.846
evm.TU.supercontig_27.254
Carica papaya
evm.TU.supercontig_27.254
N
0.801
Ciclev10014811m.g
Citrus clementina
Ciclev10014811m.g
N
0.794
orange1.1g008984m.g
Citrus sinensis
orange1.1g008984m.g
N
0.791
27529.m000047
Ricinus communis
27529.m000047
N
0.764
SapurV1A.0823s0110
Salix purpurea
SapurV1A.0823s0110
N
0.764
POPTR_0016s01110
Populus trichocarpa
POPTR_0016s01110
N
0.762
GLYMA15G12320
Glycine max
GLYMA15G12320
N
0.759
Lus10000539.g
Linum usitatissimum
Lus10000539.g
N
0.756
Lus10017554.g
Linum usitatissimum
Lus10017554.g
N
0.756
GLYMA09G01440
Glycine max
GLYMA09G01440
N
0.753
SCL13
Vitis vinifera
VIT_00s0463g00020
N
0.753
Eucgr.D01435
Eucalyptus grandis
Eucgr.D01435
N
0.751
SapurV1A.0359s0250
Salix purpurea
SapurV1A.0359s0250
N
0.751
chr4.CM0288.500.nc
Lotus japonicus
chr4.CM0288.500.nc
N
0.751
chr6.LjT16B20.120.nc
Lotus japonicus
chr6.LjT16B20.120.nc
N
0.751
PRUPE_ppa003910mg
Prunus persica
PRUPE_ppa003910mg
N
0.748
Pm012494
Prunus mume
Pm012494
N
0.748
POPTR_0006s01720
Populus trichocarpa
POPTR_0006s01720
N
0.745
GLYMA07G39650
Glycine max
GLYMA07G39650
N
0.743
Ca_20223
Cicer arietinum
Ca_20223
N
0.743
GLYMA17G01150
Glycine max
GLYMA17G01150
N
0.740
MDP0000254936
Malus domestica
MDP0000254936
N
0.734
MTR_4g133660
Medicago truncatula
MTR_4g133660
N
0.732
Ca_07887
Cicer arietinum
Ca_07887
N
0.729
Cla014623
Citrullus lanatus
Cla014623
N
0.729
Cucsa.044690
Cucumis sativus
Cucsa.044690
N
0.729
PK04573.1
Cannabis sativa
PK04573.1
N
0.729
mgf007403m
Mimulus guttatus
mgf007403m
N
0.726
PGSC0003DMG400013356
Solanum tuberosum
PGSC0003DMG400013356
N
0.715
TCM_002319
Theobroma cacao
TCM_002319
N
0.713
Solyc11g012510.1
Solanum lycopersicum
Solyc11g012510.1
N
0.710
Gorai.001G192800
Gossypium raimondii
Gorai.001G192800
N
0.707
Gorai.007G167000
Gossypium raimondii
Gorai.007G167000
N
0.707
evm.TU.supercontig_136.17
Carica papaya
evm.TU.supercontig_136.17
N
0.705
Aquca_028_00248
Aquilegia coerulea
Aquca_028_00248
N
0.702