Alligator_sinensis_CCG011265.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG011265.1 T133278_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF704
M04519_2.00 		Homo sapiens
HRCCGGCCGGYD
HRCCGGCCGGYD		 SELEX
Yin et al.(2017)
ZNF704_FL_HT-SELEX 		0.827 1.000
ZNF704
M04520_2.00 		Homo sapiens
NRCCGGCCGGYN
NRCCGGCCGGYN		 SELEX
Yin et al.(2017)
ZNF704_FL_Methyl-HT-SELEX 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG011265.1 C2H2 ZF 155 180

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I 0.000
Lus10005921.g Linum usitatissimum Lus10005921.g N 0.000
cassava34339.m1 Manihot esculenta cassava34339.m1 N 0.000
cassava39076.m1 Manihot esculenta cassava39076.m1 N 0.000
mgf025545m Mimulus guttatus mgf025545m N 0.000
Bostr.26833s0978 Boechera stricta Bostr.26833s0978 N 0.000
Cagra.0084s0050 Capsella grandiflora Cagra.0084s0050 N 0.000
Carubv10028317m.g Capsella rubella Carubv10028317m.g N 0.000
evm.TU.supercontig_3.98 Carica papaya evm.TU.supercontig_3.98 N 0.000
gene12898-v1.0-hybrid Fragaria vesca gene12898-v1.0-hybrid N 0.000
Gorai.003G121600 Gossypium raimondii Gorai.003G121600 N 0.000
Pm019768 Prunus mume Pm019768 N 0.000
MDP0000141137 Malus domestica MDP0000141137 N 0.000
MDP0000819497 Malus domestica MDP0000819497 N 0.000
SapurV1A.0250s0360 Salix purpurea SapurV1A.0250s0360 N 0.000
SapurV1A.0498s0250 Salix purpurea SapurV1A.0498s0250 N 0.000
Thhalv10015321m.g Eutrema salsugineum Thhalv10015321m.g N 0.000
chr1.CM0033.320.nc Lotus japonicus chr1.CM0033.320.nc N 0.000
chr1.CM0033.390.nc Lotus japonicus chr1.CM0033.390.nc N 0.000
chr4.CM0131.310.nd Lotus japonicus chr4.CM0131.310.nd N 0.000
LjSGA_030914.1 Lotus japonicus LjSGA_030914.1 N 0.000
MTR_3g091700 Medicago truncatula MTR_3g091700 N 0.000
RKD4 Arabidopsis thaliana AT5G53040 N 0.000
Bo2g046220 Brassica oleracea Bo2g046220 N 0.000
Bo9g108730 Brassica oleracea Bo9g108730 N 0.000
Bra003088 Brassica rapa Bra003088 N 0.000
Bra022622 Brassica rapa Bra022622 N 0.000
GLYMA06G13530 Glycine max GLYMA06G13530 N 0.000
GLYMA06G13540 Glycine max GLYMA06G13540 N 0.000
GSMUA_Achr4G08610_001 Musa acuminata GSMUA_Achr4G08610_001 N 0.000
GSMUA_AchrUn_randomG11290_001 Musa acuminata GSMUA_AchrUn_randomG11290_001 N 0.000
Cla004331 Citrullus lanatus Cla004331 N 0.000
PGSC0003DMG400018531 Solanum tuberosum PGSC0003DMG400018531 N 0.000
POPTR_0012s02390 Populus trichocarpa POPTR_0012s02390 N 0.000
POPTR_0015s01410 Populus trichocarpa POPTR_0015s01410 N 0.000
PRUPE_ppa015130mg Prunus persica PRUPE_ppa015130mg N 0.000
Solyc03g083040.1 Solanum lycopersicum Solyc03g083040.1 N 0.000
TCM_015430 Theobroma cacao TCM_015430 N 0.000
VIT_16s0098g01730 Vitis vinifera VIT_16s0098g01730 N 0.000
Ca_03992 Cicer arietinum Ca_03992 N 0.000