Alligator_sinensis_CCG011983.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG011983.1 T133289_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM12
M10213_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM12_01 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG011983.1 C2H2 ZF 242 264
Alligator_sinensis_CCG011983.1 C2H2 ZF 270 292
Alligator_sinensis_CCG011983.1 C2H2 ZF 298 322

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRDM12 Homo sapiens ENSG00000130711 D 0.827
prdm12b Takifugu rubripes ENSTRUG00000018659 I 0.827
ENSORLG00000017558 Oryzias latipes ENSORLG00000017558 I 0.824
ENSPANG00000025967 Papio anubis ENSPANG00000025967 I 0.827
ENSPFOG00000019841 Poecilia formosa ENSPFOG00000019841 I 0.824
ENSPPYG00000019694 Pongo abelii ENSPPYG00000019694 I 0.827
ENSPSIG00000006739 Pelodiscus sinensis ENSPSIG00000006739 I 0.827
PRDM12 Pan troglodytes ENSPTRG00000021475 I 0.827
PRDM12 Pteropus vampyrus ENSPVAG00000001511 I 0.827
Prdm12 Rattus norvegicus ENSRNOG00000009218 I 0.827
ENSSHAG00000015972 Sarcophilus harrisii ENSSHAG00000015972 I 0.827
PRDM12 Sus scrofa ENSSSCG00000005703 I 0.827
ENSSTOG00000005986 Ictidomys tridecemlineatus ENSSTOG00000005986 I 0.827
ENSTNIG00000005859 Tetraodon nigroviridis ENSTNIG00000005859 I 0.824
ENSTRUG00000013239 Takifugu rubripes ENSTRUG00000013239 I 0.824
PRDM12 Ochotona princeps ENSOPRG00000008680 I 0.827
ENSXMAG00000005537 Xiphophorus maculatus ENSXMAG00000005537 I 0.824
LotgiG130157 Lottia gigantea LotgiG130157 I 0.777
NEMVEDRAFT_v1g119550 Nematostella vectensis NEMVEDRAFT_v1g119550 I 0.780
TriadG14897 Trichoplax adhaerens TriadG14897 I 0.780
Ogr15453 Ophisaurus gracilis Ogr15453 I 0.827
Pvit_04639 Pogona vitticeps Pvit_04639 I 0.827
fgenesh2_pg.scaffold_504000008 Branchiostoma floridae fgenesh2_pg.scaffold_504000008 I 0.764
gw.504.9.1 Branchiostoma floridae gw.504.9.1 I 0.764
Ocbimv22004421m.g Octopus bimaculoides Ocbimv22004421m.g I 0.778
Sakowv30035316m.g Saccoglossus kowalevskii Sakowv30035316m.g I 0.816
prdm12 Xenopus tropicalis XB-GENE-953729 I 0.827
prdm12.L Xenopus laevis XB-GENE-953734 I 0.827
ENSLACG00000017560 Latimeria chalumnae ENSLACG00000017560 I 0.827
ENSAMEG00000016234 Ailuropoda melanoleuca ENSAMEG00000016234 I 0.827
ENSAMXG00000007663 Astyanax mexicanus ENSAMXG00000007663 I 0.824
ENSAMXG00000008540 Astyanax mexicanus ENSAMXG00000008540 I 0.824
ENSAPLG00000012403 Anas platyrhynchos ENSAPLG00000012403 I 0.827
PRDM12 Bos taurus ENSBTAG00000023797 I 0.827
PRDM12 Canis familiaris ENSCAFG00000023076 I 0.827
ENSCSAG00000014756 Chlorocebus sabaeus ENSCSAG00000014756 I 0.827
prdm12b Danio rerio ENSDARG00000007430 I 0.824
PRDM12 Dasypus novemcinctus ENSDNOG00000042302 I 0.827
ENSFALG00000001445 Ficedula albicollis ENSFALG00000001445 I 0.827
prdm12b Gasterosteus aculeatus ENSGACG00000016713 I 0.824
PRDM12 Gallus gallus ENSGALG00000003895 I 0.827
ENSGMOG00000011797 Gadus morhua ENSGMOG00000011797 I 0.824
prdm12b Oryzias latipes ENSORLG00000007114 I 0.824
PRDM12 Loxodonta africana ENSLAFG00000006979 I 0.827
ENSLOCG00000005429 Lepisosteus oculatus ENSLOCG00000005429 I 0.824
ENSMEUG00000003828 Macropus eugenii ENSMEUG00000003828 I 0.827
PRDM12 Meleagris gallopavo ENSMGAG00000005438 I 0.827
PRDM12 Microcebus murinus ENSMICG00000015480 I 0.827
PRDM12 Monodelphis domestica ENSMODG00000012108 I 0.827
Prdm12 Mus musculus ENSMUSG00000079466 I 0.827
ENSOANG00000001043 Ornithorhynchus anatinus ENSOANG00000001043 I 0.827
PRDM12 Oryctolagus cuniculus ENSOCUG00000008241 I 0.827
PRDM12 Otolemur garnettii ENSOGAG00000007557 I 0.827
ENSONIG00000002871 Oreochromis niloticus ENSONIG00000002871 I 0.824
CGI_10016801 Crassostrea gigas CGI_10016801 I 0.792