gw.504.9.1 (Branchiostoma floridae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 gw.504.9.1 T140205_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM12
M10213_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM12_01 		0.764 0.812
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw.504.9.1 C2H2 ZF 169 191
gw.504.9.1 C2H2 ZF 197 219
gw.504.9.1 C2H2 ZF 225 249

Links

Other C2H2 ZF family TFs
Other Branchiostoma floridae TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_pg.scaffold_504000008 Branchiostoma floridae fgenesh2_pg.scaffold_504000008 I 0.827
NEMVEDRAFT_v1g119550 Nematostella vectensis NEMVEDRAFT_v1g119550 I 0.779
Ocbimv22004421m.g Octopus bimaculoides Ocbimv22004421m.g I 0.777
TriadG14897 Trichoplax adhaerens TriadG14897 I 0.775
ENSAMEG00000016234 Ailuropoda melanoleuca ENSAMEG00000016234 I 0.764
ENSAMXG00000007663 Astyanax mexicanus ENSAMXG00000007663 I 0.764
ENSAMXG00000008540 Astyanax mexicanus ENSAMXG00000008540 I 0.764
ENSAPLG00000012403 Anas platyrhynchos ENSAPLG00000012403 I 0.764
PRDM12 Bos taurus ENSBTAG00000023797 I 0.764
PRDM12 Canis familiaris ENSCAFG00000023076 I 0.764
ENSCSAG00000014756 Chlorocebus sabaeus ENSCSAG00000014756 I 0.764
prdm12b Danio rerio ENSDARG00000007430 I 0.764
PRDM12 Dasypus novemcinctus ENSDNOG00000042302 I 0.764
ENSFALG00000001445 Ficedula albicollis ENSFALG00000001445 I 0.764
PRDM12 Homo sapiens ENSG00000130711 D 0.764
prdm12b Gasterosteus aculeatus ENSGACG00000016713 I 0.764
PRDM12 Gallus gallus ENSGALG00000003895 I 0.764
ENSGMOG00000011797 Gadus morhua ENSGMOG00000011797 I 0.764
ENSLACG00000017560 Latimeria chalumnae ENSLACG00000017560 I 0.764
PRDM12 Loxodonta africana ENSLAFG00000006979 I 0.764
ENSLOCG00000005429 Lepisosteus oculatus ENSLOCG00000005429 I 0.764
ENSMEUG00000003828 Macropus eugenii ENSMEUG00000003828 I 0.764
PRDM12 Meleagris gallopavo ENSMGAG00000005438 I 0.764
PRDM12 Microcebus murinus ENSMICG00000015480 I 0.764
PRDM12 Monodelphis domestica ENSMODG00000012108 I 0.764
Prdm12 Mus musculus ENSMUSG00000079466 I 0.764
ENSOANG00000001043 Ornithorhynchus anatinus ENSOANG00000001043 I 0.764
PRDM12 Oryctolagus cuniculus ENSOCUG00000008241 I 0.764
PRDM12 Otolemur garnettii ENSOGAG00000007557 I 0.764
ENSONIG00000002871 Oreochromis niloticus ENSONIG00000002871 I 0.764
PRDM12 Ochotona princeps ENSOPRG00000008680 I 0.764
prdm12b Oryzias latipes ENSORLG00000007114 I 0.764
ENSORLG00000017558 Oryzias latipes ENSORLG00000017558 I 0.764
ENSPANG00000025967 Papio anubis ENSPANG00000025967 I 0.764
ENSPFOG00000019841 Poecilia formosa ENSPFOG00000019841 I 0.764
ENSPPYG00000019694 Pongo abelii ENSPPYG00000019694 I 0.764
ENSPSIG00000006739 Pelodiscus sinensis ENSPSIG00000006739 I 0.764
PRDM12 Pan troglodytes ENSPTRG00000021475 I 0.764
PRDM12 Pteropus vampyrus ENSPVAG00000001511 I 0.764
Prdm12 Rattus norvegicus ENSRNOG00000009218 I 0.764
ENSSHAG00000015972 Sarcophilus harrisii ENSSHAG00000015972 I 0.764
PRDM12 Sus scrofa ENSSSCG00000005703 I 0.764
ENSSTOG00000005986 Ictidomys tridecemlineatus ENSSTOG00000005986 I 0.764
ENSTNIG00000005859 Tetraodon nigroviridis ENSTNIG00000005859 I 0.764
ENSTRUG00000013239 Takifugu rubripes ENSTRUG00000013239 I 0.764
prdm12b Takifugu rubripes ENSTRUG00000018659 I 0.764
ENSXMAG00000005537 Xiphophorus maculatus ENSXMAG00000005537 I 0.764
Alligator_sinensis_CCG011983.1 Alligator sinensis Alligator_sinensis_CCG011983.1 I 0.764
Ogr15453 Ophisaurus gracilis Ogr15453 I 0.764
Pvit_04639 Pogona vitticeps Pvit_04639 I 0.764
Sakowv30035316m.g Saccoglossus kowalevskii Sakowv30035316m.g I 0.764
prdm12 Xenopus tropicalis XB-GENE-953729 I 0.764
prdm12.L Xenopus laevis XB-GENE-953734 I 0.764
CGI_10016801 Crassostrea gigas CGI_10016801 I 0.760