Cmyd_10014359 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10014359 T134392_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBTB20
M04599_2.00 		Homo sapiens
NVYATACRTYVN
NBRAYGTATRBN		 SELEX
Yin et al.(2017)
ZBTB20_eDBD_HT-SELEX 		0.783 0.991
ZBTB20
M04600_2.00 		Homo sapiens
NVYATACRTTNN
NNAAYGTATRBN		 SELEX
Yin et al.(2017)
ZBTB20_eDBD_Methyl-HT-SELEX 		0.783 0.991
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10014359 C2H2 ZF 587 609
Cmyd_10014359 C2H2 ZF 615 637
Cmyd_10014359 C2H2 ZF 643 665
Cmyd_10014359 C2H2 ZF 671 693
Cmyd_10014359 C2H2 ZF 723 745

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PATZ1 Homo sapiens ENSG00000100105 D
PATZ1 Myotis lucifugus ENSMLUG00000009942 I
PATZ1 Macaca mulatta ENSMMUG00000013911 I
Patz1 Mus musculus ENSMUSG00000020453 I
PATZ1 Canis familiaris ENSCAFG00000013087 I
ENSPSIG00000011562 Pelodiscus sinensis ENSPSIG00000011562 I
ENSOARG00000010061 Ovis aries ENSOARG00000010061 N
Ogr03452 Ophisaurus gracilis Ogr03452 N
Cmyd_10005165 Chelonia mydas Cmyd_10005165 N
Alligator_sinensis_CCG014139.1 Alligator sinensis Alligator_sinensis_CCG014139.1 N
PATZ1 Taeniopygia guttata ENSTGUG00000009749 N
PATZ1 Sus scrofa ENSSSCG00000010027 N
Patz1 Rattus norvegicus ENSRNOG00000018709 N
PATZ1 Oryctolagus cuniculus ENSOCUG00000002323 N
ENSMPUG00000012814 Mustela putorius furo ENSMPUG00000012814 N
PATZ1 Felis catus ENSFCAG00000030253 N
PATZ1 Equus caballus ENSECAG00000025030 N
ENSCSAG00000008746 Chlorocebus sabaeus ENSCSAG00000008746 N