Cmyd_10017172 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10017172 T134450_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.817 0.957
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.817 0.957
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.817 0.957
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.815 0.949
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.815 0.949
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.815 0.949
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.815 0.949
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.815 0.949
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.815 0.949
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.805 0.942
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.789 0.855
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.787 0.899
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.787 0.899
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.787 0.899
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.787 0.899
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.787 0.899
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.787 0.899
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.787 0.899
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.787 0.899
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.785 0.891
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10017172 C2H2 ZF 119 142
Cmyd_10017172 C2H2 ZF 148 170
Cmyd_10017172 C2H2 ZF 176 198
Cmyd_10017172 C2H2 ZF 204 226
Cmyd_10017172 C2H2 ZF 232 254
Cmyd_10017172 C2H2 ZF 260 283

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
arid6 Danio rerio ENSDARG00000069988 D
ARID5B Homo sapiens ENSG00000150347 D
Arid5b Mus musculus ENSMUSG00000019947 D
Arid5a Mus musculus ENSMUSG00000037447 D
Arid5a Rattus norvegicus ENSRNOG00000015382 D
e_gw.4.260.1_CONSTRUCT PBM CONSTRUCTS e_gw.4.260.1_CONSTRUCT D
CapteG220448 Capitella teleta CapteG220448 I
ARID5B Anolis carolinensis ENSACAG00000010922 I
ENSAMEG00000003626 Ailuropoda melanoleuca ENSAMEG00000003626 I
ENSAMEG00000008932 Ailuropoda melanoleuca ENSAMEG00000008932 I
ENSAMXG00000005409 Astyanax mexicanus ENSAMXG00000005409 I
ENSAMXG00000006897 Astyanax mexicanus ENSAMXG00000006897 I
ENSAMXG00000012004 Astyanax mexicanus ENSAMXG00000012004 I
ENSAPLG00000010915 Anas platyrhynchos ENSAPLG00000010915 I
ARID5B Bos taurus ENSBTAG00000006729 I
ARID5A Bos taurus ENSBTAG00000014090 I
ARID5A Canis familiaris ENSCAFG00000006546 I
ARID5B Canis familiaris ENSCAFG00000012991 I
ARID5B Choloepus hoffmanni ENSCHOG00000011695 I
ENSCING00000013307 Ciona intestinalis ENSCING00000013307 I
ARID5B Callithrix jacchus ENSCJAG00000007072 I
ARID5A Callithrix jacchus ENSCJAG00000007759 I
ENSCPOG00000003685 Cavia porcellus ENSCPOG00000003685 I
ARID5A Cavia porcellus ENSCPOG00000026444 I
ENSCSAG00000007410 Chlorocebus sabaeus ENSCSAG00000007410 I
ENSCSAG00000017355 Chlorocebus sabaeus ENSCSAG00000017355 I
arid5b Danio rerio ENSDARG00000037196 I
zgc:77151 Danio rerio ENSDARG00000054307 I
arid5a Danio rerio ENSDARG00000077120 I
ARID5A Dasypus novemcinctus ENSDNOG00000035690 I
ARID5B Dasypus novemcinctus ENSDNOG00000043861 I
Arid5a Dipodomys ordii ENSDORG00000002540 I
ARID5B Equus caballus ENSECAG00000019795 I
ARID5A Equus caballus ENSECAG00000023667 I
ARID5B Erinaceus europaeus ENSEEUG00000000691 I
ARID5A Erinaceus europaeus ENSEEUG00000008247 I
ARID5B Echinops telfairi ENSETEG00000002612 I
ENSFALG00000000299 Ficedula albicollis ENSFALG00000000299 I
ENSFALG00000013304 Ficedula albicollis ENSFALG00000013304 I
ARID5A Felis catus ENSFCAG00000024950 I
ARID5B Felis catus ENSFCAG00000026767 I
ARID5A Homo sapiens ENSG00000196843 I
arid5b Gasterosteus aculeatus ENSGACG00000010603 I
ENSGACG00000015846 Gasterosteus aculeatus ENSGACG00000015846 I
ENSGALG00000002991 Gallus gallus ENSGALG00000002991 I
ENSGALG00000027335 Gallus gallus ENSGALG00000027335 I
ARID5A Gorilla gorilla ENSGGOG00000017068 I
ENSGMOG00000004984 Gadus morhua ENSGMOG00000004984 I
ENSGMOG00000008075 Gadus morhua ENSGMOG00000008075 I
ENSLACG00000014124 Latimeria chalumnae ENSLACG00000014124 I
ENSLACG00000015032 Latimeria chalumnae ENSLACG00000015032 I
ARID5A Loxodonta africana ENSLAFG00000009162 I
ARID5B Loxodonta africana ENSLAFG00000015576 I
ENSLOCG00000005151 Lepisosteus oculatus ENSLOCG00000005151 I
ENSLOCG00000006809 Lepisosteus oculatus ENSLOCG00000006809 I
ENSLOCG00000012316 Lepisosteus oculatus ENSLOCG00000012316 I
ENSLOCG00000015055 Lepisosteus oculatus ENSLOCG00000015055 I
ENSMEUG00000005354 Macropus eugenii ENSMEUG00000005354 I
ENSMEUG00000014406 Macropus eugenii ENSMEUG00000014406 I
ARID5B Meleagris gallopavo ENSMGAG00000003626 I
ENSMICG00000010866 Microcebus murinus ENSMICG00000010866 I
ARID5A Myotis lucifugus ENSMLUG00000003208 I
ARID5B Myotis lucifugus ENSMLUG00000013447 I
ARID5B Macaca mulatta ENSMMUG00000000424 I
ARID5A Macaca mulatta ENSMMUG00000030744 I
ARID5A Monodelphis domestica ENSMODG00000008611 I
ARID5B Monodelphis domestica ENSMODG00000017102 I
ENSMPUG00000008907 Mustela putorius furo ENSMPUG00000008907 I
ENSMPUG00000011076 Mustela putorius furo ENSMPUG00000011076 I
ENSNLEG00000012110 Nomascus leucogenys ENSNLEG00000012110 I
ARID5B Ornithorhynchus anatinus ENSOANG00000015260 I
ENSOARG00000004403 Ovis aries ENSOARG00000004403 I
ARID5A Oryctolagus cuniculus ENSOCUG00000012101 I
ARID5B Oryctolagus cuniculus ENSOCUG00000027029 I
ARID5A Otolemur garnettii ENSOGAG00000004116 I
ARID5B Otolemur garnettii ENSOGAG00000015939 I
ENSONIG00000000889 Oreochromis niloticus ENSONIG00000000889 I
ENSONIG00000010644 Oreochromis niloticus ENSONIG00000010644 I
ARID5A Ochotona princeps ENSOPRG00000015571 I
ENSORLG00000004756 Oryzias latipes ENSORLG00000004756 I
ENSORLG00000011620 Oryzias latipes ENSORLG00000011620 I
ENSORLG00000018351 Oryzias latipes ENSORLG00000018351 I
ENSPANG00000012565 Papio anubis ENSPANG00000012565 I
ENSPANG00000022067 Papio anubis ENSPANG00000022067 I
ARID5B Procavia capensis ENSPCAG00000002044 I
ARID5A Procavia capensis ENSPCAG00000006363 I
ENSPFOG00000010024 Poecilia formosa ENSPFOG00000010024 I
ENSPFOG00000012334 Poecilia formosa ENSPFOG00000012334 I
ENSPFOG00000012795 Poecilia formosa ENSPFOG00000012795 I
ENSPFOG00000022560 Poecilia formosa ENSPFOG00000022560 I
ENSPMAG00000002699 Petromyzon marinus ENSPMAG00000002699 I
ENSPMAG00000009067 Petromyzon marinus ENSPMAG00000009067 I
ENSPPYG00000002417 Pongo abelii ENSPPYG00000002417 I
ENSPPYG00000012072 Pongo abelii ENSPPYG00000012072 I
ENSPSIG00000010908 Pelodiscus sinensis ENSPSIG00000010908 I
ENSPSIG00000014127 Pelodiscus sinensis ENSPSIG00000014127 I
ARID5B Pan troglodytes ENSPTRG00000002534 I
ARID5A Pan troglodytes ENSPTRG00000012234 I
ARID5A Pteropus vampyrus ENSPVAG00000009400 I
ARID5B Pteropus vampyrus ENSPVAG00000010482 I
ARID5B Sorex araneus ENSSARG00000002423 I
ENSSHAG00000012252 Sarcophilus harrisii ENSSHAG00000012252 I
ENSSHAG00000018209 Sarcophilus harrisii ENSSHAG00000018209 I
ARID5A Sus scrofa ENSSSCG00000008123 I
ARID5B Sus scrofa ENSSSCG00000010219 I
ENSSTOG00000019546 Ictidomys tridecemlineatus ENSSTOG00000019546 I
ENSSTOG00000023423 Ictidomys tridecemlineatus ENSSTOG00000023423 I
ARID5B Taeniopygia guttata ENSTGUG00000005270 I
ENSTGUG00000015609 Taeniopygia guttata ENSTGUG00000015609 I
ENSTNIG00000006278 Tetraodon nigroviridis ENSTNIG00000006278 I
arid5b Tetraodon nigroviridis ENSTNIG00000007478 I
ENSTNIG00000013457 Tetraodon nigroviridis ENSTNIG00000013457 I
ENSTRUG00000001547 Takifugu rubripes ENSTRUG00000001547 I
arid5b Takifugu rubripes ENSTRUG00000010671 I
ENSTSYG00000010758 Tarsius syrichta ENSTSYG00000010758 I
ARID5A Tursiops truncatus ENSTTRG00000007812 I
ENSXMAG00000001883 Xiphophorus maculatus ENSXMAG00000001883 I
ENSXMAG00000011937 Xiphophorus maculatus ENSXMAG00000011937 I
ENSXMAG00000018209 Xiphophorus maculatus ENSXMAG00000018209 I
GB52601 Apis mellifera GB52601 I
ISCW010123 Ixodes scapularis ISCW010123 I
L798_01524 Zootermopsis nevadensis L798_01524 I
NEMVEDRAFT_v1g81183 Nematostella vectensis NEMVEDRAFT_v1g81183 I
NV18117 Nasonia vitripennis NV18117 I
SMAR000821 Strigamia maritima SMAR000821 I
SPU_011640 Strongylocentrotus purpuratus SPU_011640 I
tetur19g00310 Tetranychus urticae tetur19g00310 I
Aan_R006833 Calypte anna Aan_R006833 I
Afo_R009473 Aptenodytes forsteri Afo_R009473 I
Alligator_sinensis_CCG013281.1 Alligator sinensis Alligator_sinensis_CCG013281.1 I
Alligator_sinensis_CCG017455.1 Alligator sinensis Alligator_sinensis_CCG017455.1 I
Brh_R002693 Buceros rhinoceros Brh_R002693 I
Cflo_07446--XP_395512.3_APIME Camponotus floridanus Cflo_07446--XP_395512.3_APIME I
Cmyd_10001620 Chelonia mydas Cmyd_10001620 I
Cmyd_10021475 Chelonia mydas Cmyd_10021475 I
ENSBTAP00000008847-D1 Bos grunniens ENSBTAP00000008847-D1 I
ENSP00000279873 Macaca fascicularis ENSP00000279873 I
Gfo_R015732 Geospiza fortis Gfo_R015732 I
Hsal_01506--XP_395512.3_APIME Harpegnathos saltator Hsal_01506--XP_395512.3_APIME I
Myotis_brandtii_ARID5A_10013684 Myotis brandtii Myotis_brandtii_ARID5A_10013684 I
Myotis_brandtii_ARID5B_10031403 Myotis brandtii Myotis_brandtii_ARID5B_10031403 I
Ogr03010 Ophisaurus gracilis Ogr03010 I
Ogr08677 Ophisaurus gracilis Ogr08677 I
Pvit_18395 Pogona vitticeps Pvit_18395 I
Tal_R007047 Tyto alba Tal_R007047 I
fgenesh2_pg.scaffold_164000022 Branchiostoma floridae fgenesh2_pg.scaffold_164000022 I
Ocbimv22018673m.g Octopus bimaculoides Ocbimv22018673m.g I
Sakowv30045810m.g Saccoglossus kowalevskii Sakowv30045810m.g I
arid5b Xenopus tropicalis XB-GENE-1007579 I