Pvit_15789 (Pogona vitticeps)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pvit_15789 T137438_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Prdm16
M08997_2.00 		Mus musculus
BBCYCTGGGR
YCCCAGRGVV		 Misc
Kulakovskiy et al.(2013)
PRD16_MOUSE.H11MO.0.B 		0.825 0.995
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_15789 C2H2 ZF 36 58
Pvit_15789 C2H2 ZF 64 86
Pvit_15789 C2H2 ZF 92 115
Pvit_15789 C2H2 ZF 121 143
Pvit_15789 C2H2 ZF 149 171
Pvit_15789 C2H2 ZF 178 199
Pvit_15789 C2H2 ZF 703 725
Pvit_15789 C2H2 ZF 731 754
Pvit_15789 C2H2 ZF 760 782

Links

Other C2H2 ZF family TFs
Other Pogona vitticeps TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BPC6 Arabidopsis thaliana AT5G42520 D
Lus10024313.g Linum usitatissimum Lus10024313.g I
Bostr.3148s0250 Boechera stricta Bostr.3148s0250 I
Cagra.9562s0001 Capsella grandiflora Cagra.9562s0001 I
Carubv10026720m.g Capsella rubella Carubv10026720m.g I
Ciclev10001400m.g Citrus clementina Ciclev10001400m.g I
Eucgr.D01054 Eucalyptus grandis Eucgr.D01054 I
gene08483-v1.0-hybrid Fragaria vesca gene08483-v1.0-hybrid I
Gorai.002G124900 Gossypium raimondii Gorai.002G124900 I
Lus10012389.g Linum usitatissimum Lus10012389.g I
Ocbimv22014894m.g Octopus bimaculoides Ocbimv22014894m.g I
MDP0000933138 Malus domestica MDP0000933138 I
MDP0000947167 Malus domestica MDP0000947167 I
orange1.1g018368m.g Citrus sinensis orange1.1g018368m.g I
SapurV1A.0025s0690 Salix purpurea SapurV1A.0025s0690 I
SapurV1A.0762s0100 Salix purpurea SapurV1A.0762s0100 I
Thhalv10006075m.g Eutrema salsugineum Thhalv10006075m.g I
PK03443.1 Cannabis sativa PK03443.1 I
chr1.CM0195.10.nd Lotus japonicus chr1.CM0195.10.nd I
POPTR_0005s25720 Populus trichocarpa POPTR_0005s25720 I
Bo6g076850 Brassica oleracea Bo6g076850 I
Bra003405 Brassica rapa Bra003405 I
BPC6 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000489 I
GLYMA04G02860 Glycine max GLYMA04G02860 I
GLYMA06G02880 Glycine max GLYMA06G02880 I
MTR_1g023660 Medicago truncatula MTR_1g023660 I
PGSC0003DMG400003719 Solanum tuberosum PGSC0003DMG400003719 I
POPTR_0002s02820 Populus trichocarpa POPTR_0002s02820 I
Cucsa.159750 Cucumis sativus Cucsa.159750 I
PRUPE_ppa008316mg Prunus persica PRUPE_ppa008316mg I
Solyc04g081170.2 Solanum lycopersicum Solyc04g081170.2 I
TCM_034171 Theobroma cacao TCM_034171 I
VIT_18s0001g13730 Vitis vinifera VIT_18s0001g13730 I
Cla022781 Citrullus lanatus Cla022781 I
Pm006246 Prunus mume Pm006246 I
cassava22532.valid.m1 Manihot esculenta cassava22532.valid.m1 I