Gorai.008G106500 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.008G106500 T143047_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.796 0.848
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.796 0.848
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.795 0.804
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.768 0.652
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G106500.1 C2H2 ZF 189 211
Gorai.008G106500.1 C2H2 ZF 241 263

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NGA4 Arabidopsis thaliana AT4G01500 D 0.000
Bo00853s090 Brassica oleracea Bo00853s090 I 0.000
OPUNC04G20430 Oryza punctata OPUNC04G20430 I 0.000
NGA4 Arabidopsis lyrata scaffold_604140.1 I 0.000
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.000
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.000
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.000
Bostr.7365s0004 Boechera stricta Bostr.7365s0004 I 0.000
Cagra.23502s0003 Capsella grandiflora Cagra.23502s0003 I 0.000
Carubv10001406m.g Capsella rubella Carubv10001406m.g I 0.000
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I 0.000
Thhalv10028783m.g Eutrema salsugineum Thhalv10028783m.g I 0.000
Bo9g004050 Brassica oleracea Bo9g004050 N 0.000
Bra037417 Brassica rapa Bra037417 N 0.000
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.000