MDP0000166683 (Malus domestica)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 MDP0000166683 T143181_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZFP5
M01851_2.00 		Arabidopsis thaliana
DSWTNNNN
NNNNAWSH		 PBM
Weirauch et al.(2014)
pTH7539 		0.792 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000166683 C2H2 ZF 24 46

Links

Other C2H2 ZF family TFs
Other Malus domestica TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZFP5 Arabidopsis thaliana AT1G10480 D 0.792
Pm008291 Prunus mume Pm008291 I 0.805
chr5.LjT04G07.90.nd Lotus japonicus chr5.LjT04G07.90.nd I 0.794
Thhalv10008773m.g Eutrema salsugineum Thhalv10008773m.g I 0.792
SapurV1A.0052s0050 Salix purpurea SapurV1A.0052s0050 I 0.792
MDP0000165710 Malus domestica MDP0000165710 I 0.808
MDP0000121370 Malus domestica MDP0000121370 I 0.808
Lus10017229.g Linum usitatissimum Lus10017229.g I 0.805
gene05169-v1.0-hybrid Fragaria vesca gene05169-v1.0-hybrid I 0.757
evm.TU.supercontig_1307.1 Carica papaya evm.TU.supercontig_1307.1 I 0.805
Carubv10018785m.g Capsella rubella Carubv10018785m.g I 0.805
Carubv10003820m.g Capsella rubella Carubv10003820m.g I 0.757
Bostr.13671s0437 Boechera stricta Bostr.13671s0437 I 0.792
Bostr.13129s0308 Boechera stricta Bostr.13129s0308 I 0.757
e_gw1.34.233.1 Physcomitrella patens e_gw1.34.233.1 I 0.786
cassava45710.m1 Manihot esculenta cassava45710.m1 I 0.794
30076.m004693 Ricinus communis 30076.m004693 I 0.792
Solyc10g078990.1 Solanum lycopersicum Solyc10g078990.1 I 0.805
Solyc10g078970.1 Solanum lycopersicum Solyc10g078970.1 I 0.794
SELMODRAFT_450830 Selaginella moellendorffii SELMODRAFT_450830 I 0.780
SELMODRAFT_450828 Selaginella moellendorffii SELMODRAFT_450828 I 0.780
SELMODRAFT_450817 Selaginella moellendorffii SELMODRAFT_450817 I 0.780
PGSC0003DMG400011450 Solanum tuberosum PGSC0003DMG400011450 I 0.805
GRMZM2G703281 Zea mays GRMZM2G703281 I 0.805
GLYMA19G40220 Glycine max GLYMA19G40220 I 0.757
GLYMA03G37610 Glycine max GLYMA03G37610 I 0.757
GIS2 Arabidopsis lyrata fgenesh2_kg.6__609__AT5G06650.1 I 0.757
Bra028724 Brassica rapa Bra028724 I 0.757
Bo8g109510 Brassica oleracea Bo8g109510 I 0.792
Bo2g007320 Brassica oleracea Bo2g007320 I 0.757
GIS2 Arabidopsis thaliana AT5G06650 I 0.757