e_gw1.34.233.1 (Physcomitrella patens)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 e_gw1.34.233.1 T138041_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZFP5
M01851_2.00 		Arabidopsis thaliana
DSWTNNNN
NNNNAWSH		 PBM
Weirauch et al.(2014)
pTH7539 		0.810 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.34.233.1 C2H2 ZF 21 43

Links

Other C2H2 ZF family TFs
Other Physcomitrella patens TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30076.m004693 Ricinus communis 30076.m004693 I 0.814
SapurV1A.0052s0050 Salix purpurea SapurV1A.0052s0050 I 0.814
cassava45710.m1 Manihot esculenta cassava45710.m1 I 0.812
chr5.LjT04G07.90.nd Lotus japonicus chr5.LjT04G07.90.nd I 0.812
ZFP5 Arabidopsis thaliana AT1G10480 D 0.810
Bo8g109510 Brassica oleracea Bo8g109510 I 0.810
Bostr.13671s0437 Boechera stricta Bostr.13671s0437 I 0.810
Thhalv10008773m.g Eutrema salsugineum Thhalv10008773m.g I 0.810
MDP0000121370 Malus domestica MDP0000121370 I 0.805
MDP0000165710 Malus domestica MDP0000165710 I 0.805
GRMZM2G703281 Zea mays GRMZM2G703281 I 0.802
PGSC0003DMG400011450 Solanum tuberosum PGSC0003DMG400011450 I 0.802
Solyc10g078970.1 Solanum lycopersicum Solyc10g078970.1 I 0.802
Solyc10g078990.1 Solanum lycopersicum Solyc10g078990.1 I 0.802
Pm008291 Prunus mume Pm008291 I 0.802
Carubv10018785m.g Capsella rubella Carubv10018785m.g I 0.802
evm.TU.supercontig_1307.1 Carica papaya evm.TU.supercontig_1307.1 I 0.802
Lus10017229.g Linum usitatissimum Lus10017229.g I 0.802
SELMODRAFT_450817 Selaginella moellendorffii SELMODRAFT_450817 I 0.792
SELMODRAFT_450828 Selaginella moellendorffii SELMODRAFT_450828 I 0.792
SELMODRAFT_450830 Selaginella moellendorffii SELMODRAFT_450830 I 0.792
MDP0000166683 Malus domestica MDP0000166683 I 0.786
MTR_2g067740 Medicago truncatula MTR_2g067740 N 0.767
Ca_23376 Cicer arietinum Ca_23376 N 0.767
Bo2g155500 Brassica oleracea Bo2g155500 N 0.764
Bo9g166240 Brassica oleracea Bo9g166240 I 0.764
Bra008787 Brassica rapa Bra008787 I 0.764
Bra020571 Brassica rapa Bra020571 N 0.764
fgenesh2_kg.6__2677__AT5G27880.1 Arabidopsis lyrata fgenesh2_kg.6__2677__AT5G27880.1 N 0.764
Bostr.2902s0137 Boechera stricta Bostr.2902s0137 I 0.764
Bostr.29827s0107 Boechera stricta Bostr.29827s0107 N 0.764
Cagra.3166s0007 Capsella grandiflora Cagra.3166s0007 I 0.764
Carubv10002570m.g Capsella rubella Carubv10002570m.g I 0.764
Thhalv10015891m.g Eutrema salsugineum Thhalv10015891m.g I 0.764
Bo9g011450 Brassica oleracea Bo9g011450 I 0.757
BRADI4G37760 Brachypodium distachyon BRADI4G37760 I 0.757
F775_42450 Aegilops tauschii F775_42450 I 0.757
GRMZM2G161255 Zea mays GRMZM2G161255 I 0.757
SELMODRAFT_405785 Selaginella moellendorffii SELMODRAFT_405785 I 0.757
SELMODRAFT_450813 Selaginella moellendorffii SELMODRAFT_450813 I 0.757
SELMODRAFT_450832 Selaginella moellendorffii SELMODRAFT_450832 I 0.757
SELMODRAFT_450839 Selaginella moellendorffii SELMODRAFT_450839 I 0.757
Si037914m.g Setaria italica Si037914m.g I 0.757
Traes_5DL_DD8A0F6BE Triticum aestivum Traes_5DL_DD8A0F6BE I 0.757
gene05263-v1.0-hybrid Fragaria vesca gene05263-v1.0-hybrid I 0.757
Pavir.Ia03096 Panicum virgatum Pavir.Ia03096 I 0.757
Pavir.Ib01803 Panicum virgatum Pavir.Ib01803 I 0.757