Pavir.Bb02239 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Bb02239 T143321_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZFP5
M01851_2.00 		Arabidopsis thaliana
DSWTNNNN
NNNNAWSH		 PBM
Weirauch et al.(2014)
pTH7539 		0.766 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Bb02239.1.p C2H2 ZF 114 136

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRIUR3_16715 Triticum urartu TRIUR3_16715 N
Sb01g044280 Sorghum bicolor Sb01g044280 N
Si035052m.g Setaria italica Si035052m.g N
Si035089m.g Setaria italica Si035089m.g N
Solyc07g047950.1 Solanum lycopersicum Solyc07g047950.1 N
TCM_002319 Theobroma cacao TCM_002319 N
Traes_4AS_C30034054 Triticum aestivum Traes_4AS_C30034054 N
Traes_4BL_E20E75836 Triticum aestivum Traes_4BL_E20E75836 N
Traes_4DL_E50C77AEC Triticum aestivum Traes_4DL_E50C77AEC N
Traes_5AL_4C72C5BCB Triticum aestivum Traes_5AL_4C72C5BCB N
Traes_5AL_83E515188 Triticum aestivum Traes_5AL_83E515188 N
Traes_5BL_04BDEB5D8 Triticum aestivum Traes_5BL_04BDEB5D8 N
Traes_5BL_700283665 Triticum aestivum Traes_5BL_700283665 N
Traes_5DL_88247E2B8 Triticum aestivum Traes_5DL_88247E2B8 N
Traes_5DL_A39210547 Triticum aestivum Traes_5DL_A39210547 N
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N
TRIUR3_25879 Triticum urartu TRIUR3_25879 N
TRIUR3_30897 Triticum urartu TRIUR3_30897 N
Pm012019 Prunus mume Pm012019 N
Pm015021 Prunus mume Pm015021 N
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N
Pavir.Ia02739 Panicum virgatum Pavir.Ia02739 N
Pavir.Ia04887 Panicum virgatum Pavir.Ia04887 N
Pavir.Ib00589 Panicum virgatum Pavir.Ib00589 N
Pavir.Ib02999 Panicum virgatum Pavir.Ib02999 N
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N
PDK_20s1411471g003 Phoenix dactylifera PDK_20s1411471g003 N
OBART10G07700 Oryza barthii OBART10G07700 N
BGIOSGA032058 Oryza indica BGIOSGA032058 N
Bo9g009240 Brassica oleracea Bo9g009240 N
BRADI3G24210 Brachypodium distachyon BRADI3G24210 N
F775_08653 Aegilops tauschii F775_08653 N
F775_26780 Aegilops tauschii F775_26780 N
GRMZM2G028039 Zea mays GRMZM2G028039 N
GRMZM2G116638 Zea mays GRMZM2G116638 N
GRMZM5G885274 Zea mays GRMZM5G885274 N
LPERR03G06070 Leersia perrieri LPERR03G06070 N
LPERR10G05390 Leersia perrieri LPERR10G05390 N
MLOC_21553 Hordeum vulgare MLOC_21553 N
MLOC_36533 Hordeum vulgare MLOC_36533 N
OB03G16920 Oryza brachyantha OB03G16920 N
OBART03G06740 Oryza barthii OBART03G06740 N
BGIOSGA012030 Oryza indica BGIOSGA012030 N
OGLUM03G06860 Oryza glumaepatula OGLUM03G06860 N
OGLUM10G07400 Oryza glumaepatula OGLUM10G07400 N
OLONG_015869 Oryza longistaminata OLONG_015869 N
OMERI03G06660 Oryza meridionalis OMERI03G06660 N
OMERI10G05450 Oryza meridionalis OMERI10G05450 N
ONIVA03G06470 Oryza nivara ONIVA03G06470 N
ONIVA10G07150 Oryza nivara ONIVA10G07150 N
OPUNC10G06730 Oryza punctata OPUNC10G06730 N
ORGLA03G0065600 Oryza glaberrima ORGLA03G0065600 N
ORGLA10G0063900 Oryza glaberrima ORGLA10G0063900 N
ORUFI03G06680 Oryza rufipogon ORUFI03G06680 N
ORUFI10G08100 Oryza rufipogon ORUFI10G08100 N
OS03G0193000 Oryza sativa OS03G0193000 N
PGSC0003DMG400006132 Solanum tuberosum PGSC0003DMG400006132 N