L893_g21036 (Steinernema glaseri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 L893_g21036 T154656_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
erm
M03686_2.00 		Drosophila melanogaster
TGATTGCTCWTTT
AAAWGAGCAATCA		 SELEX
Nitta et al.(2015)
CG31670_1 		0.769 0.848
erm
M06128_2.00 		Drosophila melanogaster
KWTGYKCWTTT
AAAWGMRCAWM		 B1H
Zhu et al.(2011)
CG31670_SANGER_5_FBgn0031375 		0.769 0.848
erm
M06129_2.00 		Drosophila melanogaster
BBRTTGCTCWTTTBN
NVAAAWGAGCAAYVV		 B1H
Zhu et al.(2011)
CG31670_SOLEXA_5_FBgn0031375 		0.769 0.848
FEZF1
M08307_2.00 		Homo sapiens
NNBTGYYYTTTTNNN
NNNAAAARRRCAVNN		 ChIP-seq
Schmitges et al.(2016)
A0PJY2_1-5.RCADE 		0.768 0.848
FEZF1
M08889_2.00 		Homo sapiens
DYTGYYCWTTTN
NAAAWGRRCARH		 Misc
Kulakovskiy et al.(2013)
FEZF1_HUMAN.H11MO.0.C 		0.768 0.848
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L893_g21036.t1 C2H2 ZF 132 154
L893_g21036.t1 C2H2 ZF 160 182
L893_g21036.t1 C2H2 ZF 188 210
L893_g21036.t1 C2H2 ZF 216 238
L893_g21036.t1 C2H2 ZF 244 266
L893_g21036.t1 C2H2 ZF 272 295
L893_g21036.t2 C2H2 ZF 81 103

Links

Other C2H2 ZF family TFs
Other Steinernema glaseri TFs

159 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BZIP53 Arabidopsis thaliana AT3G62420 D 0.000
Ciclev10029834m.g Citrus clementina Ciclev10029834m.g I 0.000
cassava35454.valid.m1 Manihot esculenta cassava35454.valid.m1 I 0.000
Ciclev10027584m.g Citrus clementina Ciclev10027584m.g I 0.000
Carubv10018852m.g Capsella rubella Carubv10018852m.g I 0.000
Cagra.0483s0006 Capsella grandiflora Cagra.0483s0006 I 0.000
Aquca_022_00003 Aquilegia coerulea Aquca_022_00003 I 0.000
Aquca_006_00360 Aquilegia coerulea Aquca_006_00360 I 0.000
Aquca_006_00040 Aquilegia coerulea Aquca_006_00040 I 0.000
Aquca_003_00556 Aquilegia coerulea Aquca_003_00556 I 0.000
mgf018581m Mimulus guttatus mgf018581m I 0.000
mgf017392m Mimulus guttatus mgf017392m I 0.000
mgf003466m Mimulus guttatus mgf003466m I 0.000
Cucsa.238410 Cucumis sativus Cucsa.238410 I 0.000
Cucsa.174700 Cucumis sativus Cucsa.174700 I 0.000
Cucsa.109420 Cucumis sativus Cucsa.109420 I 0.000
cassava9577.m1 Manihot esculenta cassava9577.m1 I 0.000
cassava41140.m1 Manihot esculenta cassava41140.m1 I 0.000
cassava40461.m1 Manihot esculenta cassava40461.m1 I 0.000
PK07533.1 Cannabis sativa PK07533.1 I 0.000
Lus10010005.g Linum usitatissimum Lus10010005.g I 0.000
Thhalv10006418m.g Eutrema salsugineum Thhalv10006418m.g I 0.000
SapurV1A.0396s0080 Salix purpurea SapurV1A.0396s0080 I 0.000
orange1.1g044691m.g Citrus sinensis orange1.1g044691m.g I 0.000
orange1.1g029952m.g Citrus sinensis orange1.1g029952m.g I 0.000
MDP0000863909 Malus domestica MDP0000863909 I 0.000
MDP0000437680 Malus domestica MDP0000437680 I 0.000
MDP0000239026 Malus domestica MDP0000239026 I 0.000
MDP0000205823 Malus domestica MDP0000205823 I 0.000
Lus10025024.g Linum usitatissimum Lus10025024.g I 0.000
Eucgr.H02330 Eucalyptus grandis Eucgr.H02330 I 0.000
Gorai.008G065300 Gossypium raimondii Gorai.008G065300 I 0.000
Gorai.007G122800 Gossypium raimondii Gorai.007G122800 I 0.000
Gorai.003G032100 Gossypium raimondii Gorai.003G032100 I 0.000
Gorai.002G126500 Gossypium raimondii Gorai.002G126500 I 0.000
Gorai.001G144200 Gossypium raimondii Gorai.001G144200 I 0.000
gene21832-v1.0-hybrid Fragaria vesca gene21832-v1.0-hybrid I 0.000
evm.TU.supercontig_538.1 Carica papaya evm.TU.supercontig_538.1 I 0.000
evm.TU.supercontig_18.43 Carica papaya evm.TU.supercontig_18.43 I 0.000
PGSC0003DMG400003529 Solanum tuberosum PGSC0003DMG400003529 I 0.000
Bra007679 Brassica rapa Bra007679 I 0.000
POPTR_0009s12250 Populus trichocarpa POPTR_0009s12250 I 0.000
POPTR_0007s14740 Populus trichocarpa POPTR_0007s14740 I 0.000
ATBZIP53 Arabidopsis lyrata fgenesh2_kg.5__2740__AT3G62420.1 I 0.000
GLYMA11G12240 Glycine max GLYMA11G12240 I 0.000
POPTR_0004s16560 Populus trichocarpa POPTR_0004s16560 I 0.000
GLYMA12G04440 Glycine max GLYMA12G04440 I 0.000
PGSC0003DMG400030946 Solanum tuberosum PGSC0003DMG400030946 I 0.000
PGSC0003DMG400021431 Solanum tuberosum PGSC0003DMG400021431 I 0.000
PRUPE_ppa011366mg Prunus persica PRUPE_ppa011366mg I 0.000
MTR_4g097440 Medicago truncatula MTR_4g097440 I 0.000
GSMUA_Achr8G29960_001 Musa acuminata GSMUA_Achr8G29960_001 I 0.000
GSMUA_Achr4G03790_001 Musa acuminata GSMUA_Achr4G03790_001 I 0.000
GSMUA_Achr1G12710_001 Musa acuminata GSMUA_Achr1G12710_001 I 0.000
GSMUA_Achr11G20700_001 Musa acuminata GSMUA_Achr11G20700_001 I 0.000
GLYMA19G05050 Glycine max GLYMA19G05050 I 0.000
GSMUA_Achr11G05140_001 Musa acuminata GSMUA_Achr11G05140_001 I 0.000
GSMUA_Achr10G12910_001 Musa acuminata GSMUA_Achr10G12910_001 I 0.000
VIT_03s0038g04450 Vitis vinifera VIT_03s0038g04450 I 0.000
cassava24775.valid.m1 Manihot esculenta cassava24775.valid.m1 I 0.000
30131.m007078 Ricinus communis 30131.m007078 I 0.000
Bo6g079450 Brassica oleracea Bo6g079450 I 0.000
Pm015434 Prunus mume Pm015434 I 0.000
Pm002353 Prunus mume Pm002353 I 0.000
Cla016841 Citrullus lanatus Cla016841 I 0.000
Cla016748 Citrullus lanatus Cla016748 I 0.000
Bo8g097830 Brassica oleracea Bo8g097830 I 0.000
Ca_03512 Cicer arietinum Ca_03512 I 0.000
TCM_004807 Theobroma cacao TCM_004807 I 0.000
Bra003500 Brassica rapa Bra003500 I 0.000
TCM_000835 Theobroma cacao TCM_000835 I 0.000
Solyc02g092090.1 Solanum lycopersicum Solyc02g092090.1 I 0.000
Solyc02g084860.1 Solanum lycopersicum Solyc02g084860.1 I 0.000
PRUPE_ppa011644mg Prunus persica PRUPE_ppa011644mg I 0.000
AMTR_s00014p00097990 Amborella trichopoda AMTR_s00014p00097990 N 0.000
Pavir.Ca00746 Panicum virgatum Pavir.Ca00746 N 0.000
orange1.1g041765m.g Citrus sinensis orange1.1g041765m.g N 0.000
Lus10024279.g Linum usitatissimum Lus10024279.g N 0.000
Lus10001347.g Linum usitatissimum Lus10001347.g N 0.000
Eucgr.L01789 Eucalyptus grandis Eucgr.L01789 N 0.000
Eucgr.G01645 Eucalyptus grandis Eucgr.G01645 N 0.000
Eucgr.F01867 Eucalyptus grandis Eucgr.F01867 N 0.000
Ciclev10002731m.g Citrus clementina Ciclev10002731m.g N 0.000
Si023562m.g Setaria italica Si023562m.g N 0.000
mgf022473m Mimulus guttatus mgf022473m N 0.000
mgf018661m Mimulus guttatus mgf018661m N 0.000
Cucsa.248080 Cucumis sativus Cucsa.248080 N 0.000
cassava42526.valid.m1 Manihot esculenta cassava42526.valid.m1 N 0.000
cassava1498.valid.m1 Manihot esculenta cassava1498.valid.m1 N 0.000